BLASTX nr result

ID: Coptis25_contig00000198 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000198
         (765 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002526287.1| ATP binding protein, putative [Ricinus commu...    68   2e-09
ref|XP_003555923.1| PREDICTED: uncharacterized protein LOC100784...    63   6e-08
ref|XP_002314835.1| predicted protein [Populus trichocarpa] gi|2...    63   8e-08
ref|XP_002277225.2| PREDICTED: uncharacterized protein LOC100264...    62   2e-07
ref|XP_002283405.1| PREDICTED: uncharacterized protein LOC100250...    62   2e-07

>ref|XP_002526287.1| ATP binding protein, putative [Ricinus communis]
           gi|223534368|gb|EEF36076.1| ATP binding protein,
           putative [Ricinus communis]
          Length = 717

 Score = 68.2 bits (165), Expect = 2e-09
 Identities = 45/123 (36%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
 Frame = +3

Query: 6   TPQLLQAPSGS---QYVSYSPHQMHHASQSIXXXXXXXX-YGYEYSDPSNPQIYYTQAHG 173
           TPQL+Q PS     QY+ YS  Q+HH SQS+         Y YE++DPS+ QIYYTQ   
Sbjct: 627 TPQLVQVPSNQHQQQYLGYS--QVHHPSQSVAPTSAGPANYAYEFADPSHAQIYYTQPLA 684

Query: 174 TALPPQYQTMTPAAAXXXXXXXXXXXXXXXXTMTPXXXXXXXXXXXQIPTDNTKPQLRTP 353
             +P  YQTM P  +                               Q+PTD+ K Q+RT 
Sbjct: 685 PTMPSHYQTMLPENS------------------------------AQLPTDSIKQQIRTS 714

Query: 354 QSI 362
           Q I
Sbjct: 715 QPI 717


>ref|XP_003555923.1| PREDICTED: uncharacterized protein LOC100784396 [Glycine max]
          Length = 721

 Score = 63.2 bits (152), Expect = 6e-08
 Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
 Frame = +3

Query: 9   PQLLQAPSGS---QYVSYSPHQMHHASQSIXXXXXXXX-YGYEYSDPSNPQIYYTQAHGT 176
           PQL+Q P+     QYV+YS  Q+HH SQS+         Y ++Y+DP++ QIYY+Q    
Sbjct: 624 PQLVQVPTSQHQQQYVTYS--QIHHPSQSMAPNSAAPANYAFDYADPAHAQIYYSQPMAP 681

Query: 177 ALPPQYQTMTPAA 215
            +P QYQTMT AA
Sbjct: 682 TIPSQYQTMTAAA 694


>ref|XP_002314835.1| predicted protein [Populus trichocarpa] gi|222863875|gb|EEF01006.1|
           predicted protein [Populus trichocarpa]
          Length = 725

 Score = 62.8 bits (151), Expect = 8e-08
 Identities = 38/75 (50%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
 Frame = +3

Query: 6   TPQLLQAPSGS---QYVSYSPHQMHHASQSIXXXXXXXX-YGYEYSDPSNPQIYYTQAHG 173
           TPQL+Q PS     QYV YS  Q+HH SQS+         YGYE+ D ++ QIYY Q   
Sbjct: 629 TPQLVQVPSNQHQQQYVGYS--QVHHPSQSVAPTSAGTANYGYEFGDHAHGQIYYAQPMA 686

Query: 174 TALPPQYQTMTPAAA 218
            A+ PQYQTMT A A
Sbjct: 687 PAM-PQYQTMTAATA 700


>ref|XP_002277225.2| PREDICTED: uncharacterized protein LOC100264517 [Vitis vinifera]
          Length = 674

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 43/123 (34%), Positives = 53/123 (43%), Gaps = 5/123 (4%)
 Frame = +3

Query: 6   TPQLLQAPSGS-----QYVSYSPHQMHHASQSIXXXXXXXXYGYEYSDPSNPQIYYTQAH 170
           TP L+Q PS       QYV +S  Q+HH  QSI        Y +EY+ P+  Q YYT   
Sbjct: 576 TPPLVQVPSNQFHQQQQYVGFS--QLHHPPQSIAAAAPN--YAFEYAHPAQDQAYYTHHS 631

Query: 171 GTALPPQYQTMTPAAAXXXXXXXXXXXXXXXXTMTPXXXXXXXXXXXQIPTDNTKPQLRT 350
              LPPQYQT+T  AA                               Q+P DNT  Q+RT
Sbjct: 632 VAPLPPQYQTLTSTAA-----------------------VALSEASAQLPIDNTMQQIRT 668

Query: 351 PQS 359
            Q+
Sbjct: 669 SQN 671


>ref|XP_002283405.1| PREDICTED: uncharacterized protein LOC100250808 [Vitis vinifera]
          Length = 697

 Score = 61.6 bits (148), Expect = 2e-07
 Identities = 47/120 (39%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
 Frame = +3

Query: 15  LLQAPSGS---QYVSYSPHQMHHASQSIXXXXXXXX-YGYEYSDPSNPQIYYTQAHGTAL 182
           L+Q PS     QYV YS  Q+HH SQSI         Y YE+SDP++ QI+Y QA    L
Sbjct: 604 LVQVPSSQHQQQYVGYS--QIHHPSQSIAPPSAATANYAYEFSDPAHAQIFYAQAMAPTL 661

Query: 183 PPQYQTMTPAAAXXXXXXXXXXXXXXXXTMTPXXXXXXXXXXXQIPTDNTKPQLRTPQSI 362
            PQYQTMT A A                 + P           Q+ TDN K Q+RT Q +
Sbjct: 662 -PQYQTMTSAPA----------------VVVP-------EASAQLSTDNIKQQIRTSQPL 697


Top