BLASTX nr result
ID: Coptis25_contig00000141
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00000141
(2042 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI32760.3| unnamed protein product [Vitis vinifera] 556 e-156
ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ... 553 e-155
ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|2... 543 e-152
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [... 521 e-145
ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-... 477 e-132
>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
Length = 561
Score = 556 bits (1433), Expect = e-156
Identities = 315/568 (55%), Positives = 386/568 (67%), Gaps = 5/568 (0%)
Frame = -2
Query: 1921 AGRQLLPSHHPLFLPKAHLRNSPSSSSSVTMLHEQATPAVTSVPTASITRNFPTSVLLQE 1742
AG +L S P F P+ H RNS SSSV MLH+Q PAV S+PT +I R FPTSVLLQE
Sbjct: 3 AGTNILSST-PSFPPRTHFRNS---SSSVLMLHDQVAPAVASIPT-TIARKFPTSVLLQE 57
Query: 1741 QRDEFRPLLH-FKDDKMSQVTPEKRYTESGPSFCEEKQCSESDQYIKDFENQLLYWPVSL 1565
QRDE+RP KD++ Q T EKR E S +E+ + +QY+ +FE QLL P
Sbjct: 58 QRDEYRPFPQALKDERTFQATLEKRQMEIVVS-ADEENSDDHNQYMVNFERQLLLQPGLW 116
Query: 1564 Y--PSLHLEEK-PLLLSTMQVTAPKNDKVLNVXXXXXXXXXXXXXXXXXXXXXXXXXANL 1394
Y PS EK P S M+ + ++V A L
Sbjct: 117 YSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAVSLYENAKL 176
Query: 1393 PGDDXXXXXXXXXXXXSAIQFPLEEKIKVKSGRLLEXXXXXXXXXXXXXVIHEPPRLKMV 1214
G D S+ PLEEK V+S RLLE +HE +
Sbjct: 177 LGADLEDSPSPSLGAISSPNLPLEEKT-VRSTRLLERRSKKRRNPKVA--VHENHGSRRA 233
Query: 1213 DVHHKMNEVFDPNDPLRLFLSGSESRKLLTAKEESELFVQIQELARLEEVKQRLQSQFGT 1034
+V K+NE +DP DPLRLFL G E+RKLLTAKEESEL VQIQEL RLEEVK+RLQS
Sbjct: 234 EVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKKRLQSHLKR 293
Query: 1033 EPTLIEWAEAVGVNCLVLQSHIHKGNRSREKMTYANFRLVVHVAKRYQGWGMNLQDLLQE 854
EPT++EWAEAVG++C VLQS +H GNRSR+K+ YAN R+VVH+AK+YQG G+NLQDLLQE
Sbjct: 294 EPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGLNLQDLLQE 353
Query: 853 GSKGLMRSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYNTLRQVRNAK 674
GS GLM S+EKFKP AGCRF++Y+YWWIRQ++RKAIFQ+SRTIRLPEN+Y+ L +V+ AK
Sbjct: 354 GSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSLLGKVKEAK 413
Query: 673 KQCIQEG-YQPSNEELARRMGMTVEKLMTLFASTKTPLSMQQPVWAEQDTTFQEITADTE 497
+ IQEG + P+ EE+A R+G+T+EKL L T+ PLSMQQPVWA+QDTTFQE+TADT
Sbjct: 414 RLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTFQEVTADTG 473
Query: 496 IERPDQVVAKQLMRQHLRNFLNILSPKERRIIRLRFGIEDGKQNSLSQIGTIFGISKERV 317
IE PD VAKQLMRQH+RN L++L+PKERRIIRLRFGI DG +LS+IG +FG SKERV
Sbjct: 474 IEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLVFGFSKERV 533
Query: 316 RQLESRALDKLRKCLSSQGLEAYAELLI 233
RQLE RAL KL++CLSS GLE+Y +LL+
Sbjct: 534 RQLEQRALHKLKQCLSSHGLESYTDLLV 561
>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
Length = 572
Score = 553 bits (1425), Expect = e-155
Identities = 314/576 (54%), Positives = 387/576 (67%), Gaps = 13/576 (2%)
Frame = -2
Query: 1921 AGRQLLPSHHPLFLPKAHLRNSPSSSSS--------VTMLHEQATPAVTSVPTASITRNF 1766
AG +L S P F P+ H RNS SS ++ V MLH+Q PAV S+PT +I R F
Sbjct: 3 AGTNILSST-PSFPPRTHFRNSSSSGNAFFFYVVLFVLMLHDQVAPAVASIPT-TIARKF 60
Query: 1765 PTSVLLQEQRDEFRPLLH-FKDDKMSQVTPEKRYTESGPSFCEEKQCSESDQYIKDFENQ 1589
PTSVLLQEQRDE+RP KD++ Q T EKR E S +E+ + +QY+ +FE Q
Sbjct: 61 PTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVS-ADEENSDDHNQYMVNFERQ 119
Query: 1588 LLYWPVSLY--PSLHLEEK-PLLLSTMQVTAPKNDKVLNVXXXXXXXXXXXXXXXXXXXX 1418
LL P Y PS EK P S M+ + ++V
Sbjct: 120 LLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALSASKQAV 179
Query: 1417 XXXXXANLPGDDXXXXXXXXXXXXSAIQFPLEEKIKVKSGRLLEXXXXXXXXXXXXXVIH 1238
A L G D S+ PLEEK V+S RLLE +H
Sbjct: 180 SLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKT-VRSTRLLERRSKKRRNPKVA--VH 236
Query: 1237 EPPRLKMVDVHHKMNEVFDPNDPLRLFLSGSESRKLLTAKEESELFVQIQELARLEEVKQ 1058
E + +V K+NE +DP DPLRLFL G E+RKLLTAKEESEL VQIQEL RLEEVK+
Sbjct: 237 ENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMRLEEVKK 296
Query: 1057 RLQSQFGTEPTLIEWAEAVGVNCLVLQSHIHKGNRSREKMTYANFRLVVHVAKRYQGWGM 878
RLQS EPT++EWAEAVG++C VLQS +H GNRSR+K+ YAN R+VVH+AK+YQG G+
Sbjct: 297 RLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQYQGRGL 356
Query: 877 NLQDLLQEGSKGLMRSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYNT 698
NLQDLLQEGS GLM S+EKFKP AGCRF++Y+YWWIRQ++RKAIFQ+SRTIRLPEN+Y+
Sbjct: 357 NLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLPENMYSL 416
Query: 697 LRQVRNAKKQCIQEG-YQPSNEELARRMGMTVEKLMTLFASTKTPLSMQQPVWAEQDTTF 521
L +V+ AK+ IQEG + P+ EE+A R+G+T+EKL L T+ PLSMQQPVWA+QDTTF
Sbjct: 417 LGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWADQDTTF 476
Query: 520 QEITADTEIERPDQVVAKQLMRQHLRNFLNILSPKERRIIRLRFGIEDGKQNSLSQIGTI 341
QE+TADT IE PD VAKQLMRQH+RN L++L+PKERRIIRLRFGI DG +LS+IG +
Sbjct: 477 QEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTLSEIGLV 536
Query: 340 FGISKERVRQLESRALDKLRKCLSSQGLEAYAELLI 233
FG SKERVRQLE RAL KL++CLSS GLE+Y +LL+
Sbjct: 537 FGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572
>ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|222833385|gb|EEE71862.1|
predicted protein [Populus trichocarpa]
Length = 535
Score = 543 bits (1399), Expect = e-152
Identities = 311/575 (54%), Positives = 388/575 (67%), Gaps = 13/575 (2%)
Frame = -2
Query: 1921 AGRQLLPSHHPLFLPKAHLRNSPSSSSSVTMLHEQATPAVTSVPTASITRNFPTSVLLQE 1742
AGR LL S P F + HL+NS +SSV +L EQATPAV+S+PT S ++FPTSVLLQE
Sbjct: 3 AGRTLLSSS-PSFPTRTHLKNS--LTSSVLILREQATPAVSSIPTTSTAQHFPTSVLLQE 59
Query: 1741 QRDEFRPLLH-FKDDKMSQVTPEKRYTESGPSFCEEKQCSESDQYIKDFENQL----LYW 1577
QRDEFRPL + FK+D+ SQ T ++R TE G S E K E DQ +++FE QL YW
Sbjct: 60 QRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLVENFEYQLHHWPAYW 119
Query: 1576 P-----VSLYPS--LHLEEKPLLLSTMQVTAPKNDKVLNVXXXXXXXXXXXXXXXXXXXX 1418
+ + P+ ++L ++ L S N+ L+
Sbjct: 120 NLTDKLIDVEPTNVINLAKRALSASKHAAFLADNNTDLD--------------------- 158
Query: 1417 XXXXXANLPGDDXXXXXXXXXXXXSAIQFPLEEKIKVKSGRLLEXXXXXXXXXXXXXVIH 1238
NL + F LEE V+S R L +I
Sbjct: 159 ------NLASTS-------------SSSFSLEEVKIVRSRRHLARQSLNRRAPKTKDLIF 199
Query: 1237 EPPRLKMVDVHHKMNEVFDPNDPLRLFLSGSESRKLLTAKEESELFVQIQELARLEEVKQ 1058
E K D+ ++++ FDPNDPLRLFL G E+++LLTAKEE EL QIQ+L LE VK
Sbjct: 200 ETYDSKSADIQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELIAQIQDLMNLEGVKN 259
Query: 1057 RLQSQFGTEPTLIEWAEAVGVNCLVLQSHIHKGNRSREKMTYANFRLVVHVAKRYQGWGM 878
RL+SQFG EPTL+EWA+AVG++C VL+ +H GNRSREK+ AN R+VVH+AKRYQ G+
Sbjct: 260 RLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLRMVVHIAKRYQNRGL 319
Query: 877 NLQDLLQEGSKGLMRSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYNT 698
LQDLLQEG+ GLM+SIEKFKPQAGCRF+TY+YWWIRQ+I KAIFQ+SRTIRLPENVY
Sbjct: 320 GLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQHSRTIRLPENVYGL 379
Query: 697 LRQVRNAKKQCIQEG-YQPSNEELARRMGMTVEKLMTLFASTKTPLSMQQPVWAEQDTTF 521
L +V AK+ IQEG +QP+ EE+ARR+G+ ++KL L T+TPLSMQQ VW++Q+TTF
Sbjct: 380 LGKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPLSMQQTVWSDQNTTF 439
Query: 520 QEITADTEIERPDQVVAKQLMRQHLRNFLNILSPKERRIIRLRFGIEDGKQNSLSQIGTI 341
QEITADTEIE PD VAKQLMR+H+R LNILS KERRIIRLRFGIEDGKQ SLS+IG +
Sbjct: 440 QEITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGIEDGKQKSLSEIGNV 499
Query: 340 FGISKERVRQLESRALDKLRKCLSSQGLEAYAELL 236
FG+SKERVRQLESRAL KL++C+ S GL+AYA+LL
Sbjct: 500 FGLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 534
>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 548
Score = 521 bits (1341), Expect = e-145
Identities = 297/564 (52%), Positives = 373/564 (66%), Gaps = 8/564 (1%)
Frame = -2
Query: 1900 SHHPLFLPKAHLRNSPSSSSS-----VTMLHEQATPAVTSVPTASITRNFPTSVLLQEQR 1736
S P F + H +NS SSS + V MLHEQA PAVTS PT SI RNFPTSVLLQEQR
Sbjct: 9 SSPPPFPSRTHFKNSLSSSDAYVDNFVFMLHEQAVPAVTSAPTTSIARNFPTSVLLQEQR 68
Query: 1735 DEFRPLLH-FKDDKMSQVTPEKRYTESGPSFCEEKQCSES-DQYIKDFENQLLYWPVSLY 1562
DEFRPLL+ FK+DK Q T + + + G S +E CS+ DQ I + L W
Sbjct: 69 DEFRPLLNIFKEDKTFQATVDTKQMDPGTSD-QEGICSDVLDQLIL---HSNLSW----- 119
Query: 1561 PSLHLEEKPLLLSTMQVTAPKNDKVLNVXXXXXXXXXXXXXXXXXXXXXXXXXANLPGDD 1382
SL ++ + V P N L P D
Sbjct: 120 -SLTMQSITTNTDELMVVEPTNVIDLARKALSASKEAALLAQKCANLDDTVSTGLEPTD- 177
Query: 1381 XXXXXXXXXXXXSAIQFPLEEKIKVKSGRLLEXXXXXXXXXXXXXVIHEPPRLKMVDVHH 1202
F LEE V+S R LE + HEP + V
Sbjct: 178 -------------LSNFSLEEVKTVRSTRRLERQSKNRRVTKTKEIFHEPYSSRRAGVQK 224
Query: 1201 KMNEVFDPNDPLRLFLSGSESRKLLTAKEESELFVQIQELARLEEVKQRLQSQFGTEPTL 1022
K+NE FDP DPLRLFL G E+++LLTAKEESEL Q+Q+L LE VK++ + QFG +PTL
Sbjct: 225 KINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLENVKEKFKLQFGRDPTL 284
Query: 1021 IEWAEAVGVNCLVLQSHIHKGNRSREKMTYANFRLVVHVAKRYQGWGMNLQDLLQEGSKG 842
+EWA+AVG++ V+QS +H GNRSREK+ AN R+VVH+AK+YQG G++LQDLLQEGS G
Sbjct: 285 VEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQGRGLSLQDLLQEGSMG 344
Query: 841 LMRSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYNTLRQVRNAKKQCI 662
LM+SIEKFKPQ GCRF+TY+YWWIRQ++RKAIFQ+SRTIRLPENVY+TL +V AK+ I
Sbjct: 345 LMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPENVYHTLGKVSEAKRSYI 404
Query: 661 QEG-YQPSNEELARRMGMTVEKLMTLFASTKTPLSMQQPVWAEQDTTFQEITADTEIERP 485
EG + P+ EELA+R+G+T +L L + PLSMQQ VWA+Q+TTFQEITAD E+E P
Sbjct: 405 MEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQETTFQEITADIEVEIP 464
Query: 484 DQVVAKQLMRQHLRNFLNILSPKERRIIRLRFGIEDGKQNSLSQIGTIFGISKERVRQLE 305
+ VAKQLMR+H+ + LNIL+P+ER+IIRLR+GIEDGK+ SLS+IG++FG+SKERVRQLE
Sbjct: 465 ELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSEIGSVFGLSKERVRQLE 524
Query: 304 SRALDKLRKCLSSQGLEAYAELLI 233
SRAL KL++CL+S GLEAYA+LL+
Sbjct: 525 SRALYKLKQCLASHGLEAYADLLV 548
>ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
Length = 571
Score = 477 bits (1228), Expect = e-132
Identities = 276/565 (48%), Positives = 347/565 (61%), Gaps = 12/565 (2%)
Frame = -2
Query: 1891 PLFLPKAH----LRNSPSSSSSVTMLHEQATPAVTSVPTASITRNFPTSVLLQEQRDEFR 1724
P F P+ H S SS+SSV MLHEQA+P V S + +NFP SVLL EQRDE+R
Sbjct: 12 PPFPPRTHHPWSTLPSSSSTSSVLMLHEQASPTVASWSSNFSAQNFPASVLLPEQRDEYR 71
Query: 1723 PLLHF-KDDKMSQVTPEKRYTESGPSFCEEKQCSESDQYIKDFENQLLYWPVSLYPSLHL 1547
PLLH K+DK SQ R ++ + EE +DQ + DF L +WP S +
Sbjct: 72 PLLHMSKEDKTSQAMLSTRQMDT-VTVHEENNTENADQVVLDFRKHLHHWPNLQLTSSQI 130
Query: 1546 EEKPLLLSTMQVTAPKNDKVLNVXXXXXXXXXXXXXXXXXXXXXXXXXANLPGDDXXXXX 1367
E + V+ + V ++ DD
Sbjct: 131 GEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESSVVEDLKSIKADDVPFSL 190
Query: 1366 XXXXXXXSAIQFPLEEKIKVKSGRLLEXXXXXXXXXXXXXVIHEPPRLKMVDVHHKM--- 1196
+I V+S RLLE + E + D K+
Sbjct: 191 ASTSLADPSIG----RNKTVRSTRLLERRSKQRKVPKSKVIDDETYLARKDDAQEKLRAE 246
Query: 1195 ---NEVFDPNDPLRLFLSGSESRKLLTAKEESELFVQIQELARLEEVKQRLQSQFGTEPT 1025
NE D +DPLRLFL G E+++LLT ++ES+L QIQ+L RLEEVK LQSQFG EPT
Sbjct: 247 KKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLRLEEVKTNLQSQFGREPT 306
Query: 1024 LIEWAEAVGVNCLVLQSHIHKGNRSREKMTYANFRLVVHVAKRYQGWGMNLQDLLQEGSK 845
+ EWAE G+NC +LQS +H GNRSREK+ AN R+VVHVAK YQG G++LQDLLQEGS
Sbjct: 307 MAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSM 366
Query: 844 GLMRSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPENVYNTLRQVRNAKKQC 665
GLM+S+EKF P AG RF Y++WWIRQ+IRKA+F++SRTIRLPE V+ L +V AKK
Sbjct: 367 GLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVFILLGKVMEAKKLY 426
Query: 664 IQEG-YQPSNEELARRMGMTVEKLMTLFASTKTPLSMQQPVWAEQDTTFQEITADTEIER 488
IQEG P+ EELARR+G+TVEK+ L S + P+SMQQ VWA+Q+TTFQEITAD +E
Sbjct: 427 IQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWADQNTTFQEITADPTVEA 486
Query: 487 PDQVVAKQLMRQHLRNFLNILSPKERRIIRLRFGIEDGKQNSLSQIGTIFGISKERVRQL 308
D V KQLMR+H+ N L++L PKERRIIRLR+G EDG+Q SLS+IG IFG+SKERVRQL
Sbjct: 487 TDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSLSEIGDIFGLSKERVRQL 546
Query: 307 ESRALDKLRKCLSSQGLEAYAELLI 233
E RAL KL+KCL QGL+AY +LL+
Sbjct: 547 EIRALYKLKKCLVKQGLDAYVDLLL 571