BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000025
         (392 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267875.1| PREDICTED: ATP-dependent DNA helicase 2 subu...   100   6e-30
ref|XP_002521532.1| ku P70 DNA helicase, putative [Ricinus commu...   107   4e-29
dbj|BAF03493.1| Ku70 homolog [Populus nigra]                          103   5e-29
ref|XP_004161593.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependen...    96   1e-28
ref|XP_004152086.1| PREDICTED: ATP-dependent DNA helicase 2 subu...    96   1e-28

>ref|XP_002267875.1| PREDICTED: ATP-dependent DNA helicase 2 subunit KU70 [Vitis
           vinifera] gi|296089629|emb|CBI39448.3| unnamed protein
           product [Vitis vinifera]
          Length = 623

 Score =  100 bits (249), Expect(2) = 6e-30
 Identities = 49/74 (66%), Positives = 57/74 (77%), Gaps = 5/74 (6%)
 Frame = -1

Query: 374 REIFGSTSIFIALHRSMV-----CAGLFGSSSHPQLVILVAQDEISSSSGQVEPPGMHMI 210
           +E+ GST IFIALHRSM+         +G S+HPQLV LVAQDEI +   QVEPPGMHMI
Sbjct: 379 KEVVGSTCIFIALHRSMLRLKRFAVAFYGGSAHPQLVALVAQDEIIAGGVQVEPPGMHMI 438

Query: 209 YLPYSDDVRHIEEV 168
           YLPYSDD+RHIEE+
Sbjct: 439 YLPYSDDIRHIEEL 452



 Score = 55.5 bits (132), Expect(2) = 6e-30
 Identities = 24/32 (75%), Positives = 31/32 (96%)
 Frame = -2

Query: 97  SPRATEDQIQKATALVKRVDLKEFSVC*FANP 2
           +PRAT+DQI+KATAL++R+DLK+FSVC FANP
Sbjct: 460 TPRATDDQIKKATALMRRIDLKDFSVCQFANP 491


>ref|XP_002521532.1| ku P70 DNA helicase, putative [Ricinus communis]
           gi|223539210|gb|EEF40803.1| ku P70 DNA helicase,
           putative [Ricinus communis]
          Length = 626

 Score =  107 bits (266), Expect(2) = 4e-29
 Identities = 52/73 (71%), Positives = 59/73 (80%), Gaps = 5/73 (6%)
 Frame = -1

Query: 374 REIFGSTSIFIALHRSMV-----CAGLFGSSSHPQLVILVAQDEISSSSGQVEPPGMHMI 210
           +E+ GSTSIFIALHRSM+         +G SSHP+LV LVAQDEI S+ GQ+EPPGMHMI
Sbjct: 381 KEVIGSTSIFIALHRSMLRLNRFAVAFYGGSSHPRLVALVAQDEIVSAGGQIEPPGMHMI 440

Query: 209 YLPYSDDVRHIEE 171
           YLPYSDDVRHIEE
Sbjct: 441 YLPYSDDVRHIEE 453



 Score = 46.2 bits (108), Expect(2) = 4e-29
 Identities = 20/31 (64%), Positives = 24/31 (77%)
 Frame = -2

Query: 94  PRATEDQIQKATALVKRVDLKEFSVC*FANP 2
           P A  DQ +KA  L+KR+DLK+FSVC FANP
Sbjct: 463 PHANGDQTKKAAGLIKRIDLKDFSVCQFANP 493


>dbj|BAF03493.1| Ku70 homolog [Populus nigra]
          Length = 627

 Score =  103 bits (256), Expect(2) = 5e-29
 Identities = 52/74 (70%), Positives = 58/74 (78%), Gaps = 5/74 (6%)
 Frame = -1

Query: 374 REIFGSTSIFIALHRSMV-----CAGLFGSSSHPQLVILVAQDEISSSSGQVEPPGMHMI 210
           +E+ GST IFIAL RSMV         +GSSS PQLV LVAQDEI S+ GQVEPPGMHMI
Sbjct: 382 KEVIGSTCIFIALLRSMVNLKRFAVAFYGSSSRPQLVALVAQDEIISAGGQVEPPGMHMI 441

Query: 209 YLPYSDDVRHIEEV 168
           YLPYSDDVRH+EE+
Sbjct: 442 YLPYSDDVRHVEEI 455



 Score = 49.7 bits (117), Expect(2) = 5e-29
 Identities = 22/32 (68%), Positives = 29/32 (90%)
 Frame = -2

Query: 97  SPRATEDQIQKATALVKRVDLKEFSVC*FANP 2
           +PRAT++QI+KA AL+KR+DLK+FSV  FANP
Sbjct: 463 APRATDEQIKKAAALIKRIDLKDFSVFQFANP 494


>ref|XP_004161593.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase 2
           subunit KU70-like [Cucumis sativus]
          Length = 625

 Score = 96.3 bits (238), Expect(2) = 1e-28
 Identities = 47/70 (67%), Positives = 56/70 (80%), Gaps = 5/70 (7%)
 Frame = -1

Query: 362 GSTSIFIALHRSMV-----CAGLFGSSSHPQLVILVAQDEISSSSGQVEPPGMHMIYLPY 198
           GST IFIALHRSMV         FGS S PQLV LVAQDEI +++GQVEPPGM+M+YLPY
Sbjct: 386 GSTCIFIALHRSMVKLNRFAVAFFGSPSRPQLVALVAQDEIITAAGQVEPPGMNMLYLPY 445

Query: 197 SDDVRHIEEV 168
           +DD+RH+EE+
Sbjct: 446 ADDIRHVEEL 455



 Score = 55.5 bits (132), Expect(2) = 1e-28
 Identities = 23/34 (67%), Positives = 32/34 (94%)
 Frame = -2

Query: 103 NLSPRATEDQIQKATALVKRVDLKEFSVC*FANP 2
           +++PRAT+DQ++KA AL+KR+DLK+FSVC FANP
Sbjct: 460 DIAPRATDDQVKKAAALMKRIDLKDFSVCQFANP 493


>ref|XP_004152086.1| PREDICTED: ATP-dependent DNA helicase 2 subunit KU70-like [Cucumis
           sativus]
          Length = 625

 Score = 96.3 bits (238), Expect(2) = 1e-28
 Identities = 47/70 (67%), Positives = 56/70 (80%), Gaps = 5/70 (7%)
 Frame = -1

Query: 362 GSTSIFIALHRSMV-----CAGLFGSSSHPQLVILVAQDEISSSSGQVEPPGMHMIYLPY 198
           GST IFIALHRSMV         FGS S PQLV LVAQDEI +++GQVEPPGM+M+YLPY
Sbjct: 386 GSTCIFIALHRSMVKLNRFAVAFFGSPSRPQLVALVAQDEIITAAGQVEPPGMNMLYLPY 445

Query: 197 SDDVRHIEEV 168
           +DD+RH+EE+
Sbjct: 446 ADDIRHVEEL 455



 Score = 55.5 bits (132), Expect(2) = 1e-28
 Identities = 23/34 (67%), Positives = 32/34 (94%)
 Frame = -2

Query: 103 NLSPRATEDQIQKATALVKRVDLKEFSVC*FANP 2
           +++PRAT+DQ++KA AL+KR+DLK+FSVC FANP
Sbjct: 460 DIAPRATDDQVKKAAALMKRIDLKDFSVCQFANP 493