BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00000024
         (894 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267875.1| PREDICTED: ATP-dependent DNA helicase 2 subu...   387   e-105
dbj|BAF03493.1| Ku70 homolog [Populus nigra]                          383   e-104
ref|XP_004161593.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependen...   371   e-100
ref|XP_004152086.1| PREDICTED: ATP-dependent DNA helicase 2 subu...   371   e-100
ref|XP_002521532.1| ku P70 DNA helicase, putative [Ricinus commu...   368   e-100

>ref|XP_002267875.1| PREDICTED: ATP-dependent DNA helicase 2 subunit KU70 [Vitis vinifera]
            gi|296089629|emb|CBI39448.3| unnamed protein product
            [Vitis vinifera]
          Length = 623

 Score =  387 bits (995), Expect = e-105
 Identities = 189/255 (74%), Positives = 225/255 (88%)
 Frame = -1

Query: 894  TFIFPSDDEIFGSTSIFIALHRSMVRLERFALAFFGSSSHPQLVALVAQDEISSSSGQVE 715
            TF+FP+D E+ GST IFIALHRSM+RL+RFA+AF+G S+HPQLVALVAQDEI +   QVE
Sbjct: 372  TFVFPTDKEVVGSTCIFIALHRSMLRLKRFAVAFYGGSAHPQLVALVAQDEIIAGGVQVE 431

Query: 714  PPGMNMIYLPYSDDVRHIEEVHAAVGSAAPRATEDQIQKATALMKRVDLKEFSVCQFANP 535
            PPGM+MIYLPYSDD+RHIEE+H+ +    PRAT+DQI+KATALM+R+DLK+FSVCQFANP
Sbjct: 432  PPGMHMIYLPYSDDIRHIEELHSDITVPTPRATDDQIKKATALMRRIDLKDFSVCQFANP 491

Query: 534  ALQRHYAVLQALALDEDEMPELKDETLPDEQGMARSGVVNALEEFKVSVFGENYDQEEAD 355
            ALQRHYAVLQALAL+EDEMPE+KDETLPDE+GMAR GVVNALEEFK SV+GENY++E+  
Sbjct: 492  ALQRHYAVLQALALEEDEMPEIKDETLPDEEGMARPGVVNALEEFKKSVYGENYNEEDE- 550

Query: 354  ALSSKTESDAAKKRKAIHENAAKESEQYDWAELADSGKLKDLTVVELKYYLTAHSLPLTG 175
                   SDA+KKRKA+ ENA KES +YDWA+LAD+G+LKDLT VELKYYLTAH+L + G
Sbjct: 551  --GHGKASDASKKRKAVAENAVKESAKYDWADLADNGRLKDLTTVELKYYLTAHNLAVGG 608

Query: 174  KKEILISRILTHLGK 130
            KKE+LISRILTH+GK
Sbjct: 609  KKEVLISRILTHMGK 623


>dbj|BAF03493.1| Ku70 homolog [Populus nigra]
          Length = 627

 Score =  383 bits (983), Expect = e-104
 Identities = 192/255 (75%), Positives = 224/255 (87%)
 Frame = -1

Query: 894  TFIFPSDDEIFGSTSIFIALHRSMVRLERFALAFFGSSSHPQLVALVAQDEISSSSGQVE 715
            TFIFPSD E+ GST IFIAL RSMV L+RFA+AF+GSSS PQLVALVAQDEI S+ GQVE
Sbjct: 375  TFIFPSDKEVIGSTCIFIALLRSMVNLKRFAVAFYGSSSRPQLVALVAQDEIISAGGQVE 434

Query: 714  PPGMNMIYLPYSDDVRHIEEVHAAVGSAAPRATEDQIQKATALMKRVDLKEFSVCQFANP 535
            PPGM+MIYLPYSDDVRH+EE+H+   + APRAT++QI+KA AL+KR+DLK+FSV QFANP
Sbjct: 435  PPGMHMIYLPYSDDVRHVEEIHSDTNAGAPRATDEQIKKAAALIKRIDLKDFSVFQFANP 494

Query: 534  ALQRHYAVLQALALDEDEMPELKDETLPDEQGMARSGVVNALEEFKVSVFGENYDQEEAD 355
             LQRHYAVLQALALDED+MPE+ DETLPDE+GMAR GVV A+EEFK+SV+GENYD EE+D
Sbjct: 495  GLQRHYAVLQALALDEDDMPEINDETLPDEEGMARPGVVKAVEEFKLSVYGENYD-EESD 553

Query: 354  ALSSKTESDAAKKRKAIHENAAKESEQYDWAELADSGKLKDLTVVELKYYLTAHSLPLTG 175
              + K  SDA+KKRK   ENAAKES  Y+W +LAD+G+LKDLTV ELKYYLTAH+LP+TG
Sbjct: 554  MGNGKA-SDASKKRKTAVENAAKESANYNWPDLADNGQLKDLTVTELKYYLTAHNLPVTG 612

Query: 174  KKEILISRILTHLGK 130
            KKE+LISRILTHLGK
Sbjct: 613  KKEVLISRILTHLGK 627


>ref|XP_004161593.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase 2 subunit
            KU70-like [Cucumis sativus]
          Length = 625

 Score =  371 bits (952), Expect = e-100
 Identities = 181/255 (70%), Positives = 223/255 (87%)
 Frame = -1

Query: 894  TFIFPSDDEIFGSTSIFIALHRSMVRLERFALAFFGSSSHPQLVALVAQDEISSSSGQVE 715
            TF++PSD+ + GST IFIALHRSMV+L RFA+AFFGS S PQLVALVAQDEI +++GQVE
Sbjct: 375  TFLYPSDEGMSGSTCIFIALHRSMVKLNRFAVAFFGSPSRPQLVALVAQDEIITAAGQVE 434

Query: 714  PPGMNMIYLPYSDDVRHIEEVHAAVGSAAPRATEDQIQKATALMKRVDLKEFSVCQFANP 535
            PPGMNM+YLPY+DD+RH+EE+H      APRAT+DQ++KA ALMKR+DLK+FSVCQFANP
Sbjct: 435  PPGMNMLYLPYADDIRHVEELHPNP-DIAPRATDDQVKKAAALMKRIDLKDFSVCQFANP 493

Query: 534  ALQRHYAVLQALALDEDEMPELKDETLPDEQGMARSGVVNALEEFKVSVFGENYDQEEAD 355
            ALQRHYAVLQALAL+EDEMPE+ DET+PDE+GMAR GVV  LEEFK+SV+GENY++EEA 
Sbjct: 494  ALQRHYAVLQALALEEDEMPEVNDETVPDEEGMARPGVVKTLEEFKLSVYGENYEEEEA- 552

Query: 354  ALSSKTESDAAKKRKAIHENAAKESEQYDWAELADSGKLKDLTVVELKYYLTAHSLPLTG 175
                   S+ +KKRKAI E A+++ ++YDWA+LAD+GKLK+L+VVELKYYLTAH LP++G
Sbjct: 553  --GKGKVSEVSKKRKAISETASQKCKEYDWADLADNGKLKELSVVELKYYLTAHDLPVSG 610

Query: 174  KKEILISRILTHLGK 130
            KKE LISRIL+H+GK
Sbjct: 611  KKEALISRILSHMGK 625


>ref|XP_004152086.1| PREDICTED: ATP-dependent DNA helicase 2 subunit KU70-like [Cucumis
            sativus]
          Length = 625

 Score =  371 bits (952), Expect = e-100
 Identities = 181/255 (70%), Positives = 223/255 (87%)
 Frame = -1

Query: 894  TFIFPSDDEIFGSTSIFIALHRSMVRLERFALAFFGSSSHPQLVALVAQDEISSSSGQVE 715
            TF++PSD+ + GST IFIALHRSMV+L RFA+AFFGS S PQLVALVAQDEI +++GQVE
Sbjct: 375  TFLYPSDEGMSGSTCIFIALHRSMVKLNRFAVAFFGSPSRPQLVALVAQDEIITAAGQVE 434

Query: 714  PPGMNMIYLPYSDDVRHIEEVHAAVGSAAPRATEDQIQKATALMKRVDLKEFSVCQFANP 535
            PPGMNM+YLPY+DD+RH+EE+H      APRAT+DQ++KA ALMKR+DLK+FSVCQFANP
Sbjct: 435  PPGMNMLYLPYADDIRHVEELHPNP-DIAPRATDDQVKKAAALMKRIDLKDFSVCQFANP 493

Query: 534  ALQRHYAVLQALALDEDEMPELKDETLPDEQGMARSGVVNALEEFKVSVFGENYDQEEAD 355
            ALQRHYAVLQALAL+EDEMPE+ DET+PDE+GMAR GVV  LEEFK+SV+GENY++EEA 
Sbjct: 494  ALQRHYAVLQALALEEDEMPEVNDETVPDEEGMARPGVVKTLEEFKLSVYGENYEEEEA- 552

Query: 354  ALSSKTESDAAKKRKAIHENAAKESEQYDWAELADSGKLKDLTVVELKYYLTAHSLPLTG 175
                   S+ +KKRKAI E A+++ ++YDWA+LAD+GKLK+L+VVELKYYLTAH LP++G
Sbjct: 553  --GKGKVSEVSKKRKAISETASQKCKEYDWADLADNGKLKELSVVELKYYLTAHDLPVSG 610

Query: 174  KKEILISRILTHLGK 130
            KKE LISRIL+H+GK
Sbjct: 611  KKEALISRILSHMGK 625


>ref|XP_002521532.1| ku P70 DNA helicase, putative [Ricinus communis]
            gi|223539210|gb|EEF40803.1| ku P70 DNA helicase, putative
            [Ricinus communis]
          Length = 626

 Score =  368 bits (945), Expect = e-100
 Identities = 180/255 (70%), Positives = 214/255 (83%)
 Frame = -1

Query: 894  TFIFPSDDEIFGSTSIFIALHRSMVRLERFALAFFGSSSHPQLVALVAQDEISSSSGQVE 715
            TF+FPSD E+ GSTSIFIALHRSM+RL RFA+AF+G SSHP+LVALVAQDEI S+ GQ+E
Sbjct: 374  TFVFPSDKEVIGSTSIFIALHRSMLRLNRFAVAFYGGSSHPRLVALVAQDEIVSAGGQIE 433

Query: 714  PPGMNMIYLPYSDDVRHIEEVHAAVGSAAPRATEDQIQKATALMKRVDLKEFSVCQFANP 535
            PPGM+MIYLPYSDDVRHIEE H+      P A  DQ +KA  L+KR+DLK+FSVCQFANP
Sbjct: 434  PPGMHMIYLPYSDDVRHIEEFHSESNVGLPHANGDQTKKAAGLIKRIDLKDFSVCQFANP 493

Query: 534  ALQRHYAVLQALALDEDEMPELKDETLPDEQGMARSGVVNALEEFKVSVFGENYDQEEAD 355
            ALQRHYAVLQALAL+EDEMPE KDETLPDE+G+AR GVV A+EEFK+SV+G+ YD+E  +
Sbjct: 494  ALQRHYAVLQALALEEDEMPESKDETLPDEEGLARPGVVKAIEEFKLSVYGDKYDEE--N 551

Query: 354  ALSSKTESDAAKKRKAIHENAAKESEQYDWAELADSGKLKDLTVVELKYYLTAHSLPLTG 175
             L +   ++ ++KRKA  ENA  ES  YDWA+LAD+GKLKDLTV ELK YLTAH++P+ G
Sbjct: 552  LLGNGKANETSRKRKAAAENAKNESANYDWADLADNGKLKDLTVAELKLYLTAHNIPVAG 611

Query: 174  KKEILISRILTHLGK 130
            KKE LIS+ILTHLGK
Sbjct: 612  KKEALISKILTHLGK 626