BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039673
         (260 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotia...   175   3e-42
ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [S...   172   3e-41
ref|NP_001105502.1| photosystem II subunit29 [Zea mays] gi|23269...   172   3e-41
prf||1908421A light-harvesting complex IIa protein                    170   1e-40
emb|CBL86548.1| chlorophyll a/b binding protein [Olea europaea]       170   1e-40

>gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
          Length = 285

 Score =  175 bits (444), Expect = 3e-42
 Identities = 84/86 (97%), Positives = 85/86 (98%)
 Frame = -3

Query: 258 QRNAELDPEKRLYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATG 79
           QRNAELDPEKRLYPGGS+FDPLGLAADPEKK TLQLAEIKHARLAMVAFLGFAVQAAATG
Sbjct: 199 QRNAELDPEKRLYPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATG 258

Query: 78  KGPLNNWATHLSDPLHTTIFDTFGFF 1
           KGPLNNWATHLSDPLHTTIFDTFGFF
Sbjct: 259 KGPLNNWATHLSDPLHTTIFDTFGFF 284


>ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
           gi|241926393|gb|EER99537.1| hypothetical protein
           SORBIDRAFT_02g036260 [Sorghum bicolor]
          Length = 288

 Score =  172 bits (436), Expect = 3e-41
 Identities = 83/84 (98%), Positives = 83/84 (98%)
 Frame = -3

Query: 258 QRNAELDPEKRLYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATG 79
           QRNAELDPEKRLYPGGSYFDPLGLAADPEKKE LQLAEIKHARLAMVAFLGFAVQAAATG
Sbjct: 202 QRNAELDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATG 261

Query: 78  KGPLNNWATHLSDPLHTTIFDTFG 7
           KGPLNNWATHLSDPLHTTIFDTFG
Sbjct: 262 KGPLNNWATHLSDPLHTTIFDTFG 285


>ref|NP_001105502.1| photosystem II subunit29 [Zea mays] gi|2326947|emb|CAA90681.1|
           Chlorophyll a/b-binding protein CP29 precursor [Zea
           mays] gi|195639374|gb|ACG39155.1| hypothetical protein
           [Zea mays] gi|414887094|tpg|DAA63108.1| TPA: chlorophyll
           a/b-binding protein CP29 Precursor isoform 1 [Zea mays]
           gi|414887095|tpg|DAA63109.1| TPA: chlorophyll
           a/b-binding protein CP29 Precursor isoform 2 [Zea mays]
          Length = 291

 Score =  172 bits (436), Expect = 3e-41
 Identities = 83/84 (98%), Positives = 83/84 (98%)
 Frame = -3

Query: 258 QRNAELDPEKRLYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATG 79
           QRNAELDPEKRLYPGGSYFDPLGLAADPEKKE LQLAEIKHARLAMVAFLGFAVQAAATG
Sbjct: 205 QRNAELDPEKRLYPGGSYFDPLGLAADPEKKERLQLAEIKHARLAMVAFLGFAVQAAATG 264

Query: 78  KGPLNNWATHLSDPLHTTIFDTFG 7
           KGPLNNWATHLSDPLHTTIFDTFG
Sbjct: 265 KGPLNNWATHLSDPLHTTIFDTFG 288


>prf||1908421A light-harvesting complex IIa protein
          Length = 286

 Score =  170 bits (430), Expect = 1e-40
 Identities = 82/84 (97%), Positives = 83/84 (98%)
 Frame = -3

Query: 258 QRNAELDPEKRLYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATG 79
           QRNAELDPE+RLYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATG
Sbjct: 201 QRNAELDPERRLYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATG 260

Query: 78  KGPLNNWATHLSDPLHTTIFDTFG 7
           KG LNNWATHLSDPLHTTIFDTFG
Sbjct: 261 KGRLNNWATHLSDPLHTTIFDTFG 284


>emb|CBL86548.1| chlorophyll a/b binding protein [Olea europaea]
          Length = 179

 Score =  170 bits (430), Expect = 1e-40
 Identities = 81/86 (94%), Positives = 83/86 (96%)
 Frame = -3

Query: 258 QRNAELDPEKRLYPGGSYFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATG 79
           QRNAE+DPEKR YPGGS+FDPLGLAADPEKK TLQLAEIKHARLAMVAFLGFAVQAAATG
Sbjct: 93  QRNAEVDPEKRXYPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATG 152

Query: 78  KGPLNNWATHLSDPLHTTIFDTFGFF 1
           KGPLNNWATHLSDPLHTTI DTFGFF
Sbjct: 153 KGPLNNWATHLSDPLHTTILDTFGFF 178