BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00039057
         (286 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...   101   5e-20
emb|CAA73803.1| reverse transcriptase [Allium cepa]                    93   2e-17
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas...    92   4e-17
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    92   4e-17
gb|ABD96942.1| hypothetical protein [Cleome spinosa]                   91   1e-16

>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score =  101 bits (252), Expect = 5e-20
 Identities = 45/84 (53%), Positives = 67/84 (79%)
 Frame = -3

Query: 269 SRVDEFRPIACCNIIYKYVAKILTNRIEKCMPLLISGAQSAFVLGRNIQDILILAHELIR 90
           +RV EFRPIACC +IYK ++K+LTNR++  +  +++ AQS F+ GR+I D ++LA ELIR
Sbjct: 509 TRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIR 568

Query: 89  GYSRKHGTRNCAIKIDIKKAFDSI 18
           GY+RKH +  C +K+DI+KA+DS+
Sbjct: 569 GYTRKHMSPRCIMKVDIRKAYDSV 592


>emb|CAA73803.1| reverse transcriptase [Allium cepa]
          Length = 137

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 40/80 (50%), Positives = 61/80 (76%)
 Frame = -3

Query: 257 EFRPIACCNIIYKYVAKILTNRIEKCMPLLISGAQSAFVLGRNIQDILILAHELIRGYSR 78
           +FRPI+CCN IYK ++K+L +R++  +P L+S  Q+A++ GRNI D ++L+HELI+GY R
Sbjct: 2   KFRPISCCNTIYKCISKVLASRLKHVLPTLVSPNQAAYLSGRNILDHVLLSHELIKGYKR 61

Query: 77  KHGTRNCAIKIDIKKAFDSI 18
           K  T    +K+DI KAFD++
Sbjct: 62  KSATPRAMLKLDIMKAFDTL 81


>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 402

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 43/89 (48%), Positives = 66/89 (74%)
 Frame = -3

Query: 284 KNLAPSRVDEFRPIACCNIIYKYVAKILTNRIEKCMPLLISGAQSAFVLGRNIQDILILA 105
           K +  + V  FRPIACC++IYK ++KILT+R++  +  ++S  QSAFV GR I D +IL+
Sbjct: 187 KEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNIILS 246

Query: 104 HELIRGYSRKHGTRNCAIKIDIKKAFDSI 18
           HEL++ YSRK  +  C +KID++KA++S+
Sbjct: 247 HELVKSYSRKGISPRCMVKIDLQKAYNSV 275


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 39/89 (43%), Positives = 63/89 (70%)
 Frame = -3

Query: 284 KNLAPSRVDEFRPIACCNIIYKYVAKILTNRIEKCMPLLISGAQSAFVLGRNIQDILILA 105
           K +    + ++RPI+CCN++YK ++KI+ NR+++ +P  I+G QSAF+  R + + L+LA
Sbjct: 37  KKMEAKEIKDYRPISCCNVLYKVISKIIANRLKRVLPQFIAGNQSAFIKDRLLIENLLLA 96

Query: 104 HELIRGYSRKHGTRNCAIKIDIKKAFDSI 18
            EL++ Y +   +  CAIKIDI KAFDS+
Sbjct: 97  TELVKDYHKDSVSERCAIKIDISKAFDSV 125


>gb|ABD96942.1| hypothetical protein [Cleome spinosa]
          Length = 402

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 41/81 (50%), Positives = 61/81 (75%)
 Frame = -3

Query: 257 EFRPIACCNIIYKYVAKILTNRIEKCMPLLISGAQSAFVLGRNIQDILILAHELIRGYSR 78
           +FRPI+CCN +YK ++KI+ NR++  +P LISG Q+AF  GR++ D ++LA EL++ Y+R
Sbjct: 32  DFRPISCCNFLYKVISKIIANRLQLLLPWLISGNQAAFQKGRSMGDHIMLAAELVKDYNR 91

Query: 77  KHGTRNCAIKIDIKKAFDSIN 15
                +  +KIDIKKAFDSI+
Sbjct: 92  PSAEPSAMLKIDIKKAFDSIS 112