BLASTX nr result

ID: Coptis24_contig00038619 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038619
         (215 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517213.1| chloride channel clc, putative [Ricinus comm...    56   3e-06
emb|CBI26223.3| unnamed protein product [Vitis vinifera]               54   1e-05
ref|XP_002281606.1| PREDICTED: chloride channel protein CLC-d [V...    54   1e-05

>ref|XP_002517213.1| chloride channel clc, putative [Ricinus communis]
           gi|223543848|gb|EEF45376.1| chloride channel clc,
           putative [Ricinus communis]
          Length = 794

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/71 (46%), Positives = 37/71 (52%)
 Frame = -3

Query: 213 KVVSFPHVVKVADLVSILRNNKHNGFPMSFASSLVSHHKKTSFMLFCNACFMFACFQVVD 34
           KVVSFP V KVAD+VSILR+NKHNGFP                              V+D
Sbjct: 587 KVVSFPRVAKVADVVSILRSNKHNGFP------------------------------VID 616

Query: 33  HGQNGEALVIG 1
           H +NGE LVIG
Sbjct: 617 HTRNGETLVIG 627


>emb|CBI26223.3| unnamed protein product [Vitis vinifera]
          Length = 800

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 32/71 (45%), Positives = 38/71 (53%)
 Frame = -3

Query: 213 KVVSFPHVVKVADLVSILRNNKHNGFPMSFASSLVSHHKKTSFMLFCNACFMFACFQVVD 34
           KVV FP VVKVAD+VSILR+N+HNGFP                              V+D
Sbjct: 593 KVVYFPRVVKVADVVSILRSNEHNGFP------------------------------VID 622

Query: 33  HGQNGEALVIG 1
           H +NGE+LVIG
Sbjct: 623 HTRNGESLVIG 633


>ref|XP_002281606.1| PREDICTED: chloride channel protein CLC-d [Vitis vinifera]
           gi|301318138|gb|ADK66984.1| chloride channel ClC6 [Vitis
           vinifera]
          Length = 771

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 32/71 (45%), Positives = 38/71 (53%)
 Frame = -3

Query: 213 KVVSFPHVVKVADLVSILRNNKHNGFPMSFASSLVSHHKKTSFMLFCNACFMFACFQVVD 34
           KVV FP VVKVAD+VSILR+N+HNGFP                              V+D
Sbjct: 593 KVVYFPRVVKVADVVSILRSNEHNGFP------------------------------VID 622

Query: 33  HGQNGEALVIG 1
           H +NGE+LVIG
Sbjct: 623 HTRNGESLVIG 633


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