BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038494
         (427 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528283.1| pentatricopeptide repeat-containing protein,...   115   4e-24
emb|CBI37903.3| unnamed protein product [Vitis vinifera]              114   6e-24
ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containi...   114   6e-24
ref|NP_179705.1| pentatricopeptide repeat-containing protein [Ar...   110   2e-22
ref|XP_002880355.1| pentatricopeptide repeat-containing protein ...   108   5e-22

>ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532320|gb|EEF34121.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 602

 Score =  115 bits (288), Expect = 4e-24
 Identities = 61/124 (49%), Positives = 74/124 (59%)
 Frame = +3

Query: 54  KTKSPTCXXXXXXXXXXXXXXXEVVNSLQLLITKGIRXXXXXXXXXIQQCANTNSLQQGK 233
           +TK   C               + ++SL LL   GIR         +QQCANT SL+ GK
Sbjct: 11  RTKRVPCIVKSLLHLSSQGQLFQAISSLGLLSRNGIRLPSKTLAYLLQQCANTKSLKLGK 70

Query: 234 WVHLYLRLTGFKHSHPTTNTLLSNHLIHMYLKCGSDKLARKVFNKMSARNLYSWNNMLSG 413
           WVHL+L++TG K      NT L+NHLI+MY KCG    A KVF++MS RNLYSWN MLSG
Sbjct: 71  WVHLHLKVTGLKRP----NTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSG 126

Query: 414 YAKL 425
           YAKL
Sbjct: 127 YAKL 130


>emb|CBI37903.3| unnamed protein product [Vitis vinifera]
          Length = 516

 Score =  114 bits (286), Expect = 6e-24
 Identities = 58/102 (56%), Positives = 73/102 (71%)
 Frame = +3

Query: 120 EVVNSLQLLITKGIRXXXXXXXXXIQQCANTNSLQQGKWVHLYLRLTGFKHSHPTTNTLL 299
           E V+SL+ L  +G+R         +Q CA++ +L++GK VHL+L+LTG K       T L
Sbjct: 42  EAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRP----GTFL 97

Query: 300 SNHLIHMYLKCGSDKLARKVFNKMSARNLYSWNNMLSGYAKL 425
           SNHLI+MY KCG +  ARKVF+KMSARNLYSWNNMLSGYAKL
Sbjct: 98  SNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKL 139


>ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  114 bits (286), Expect = 6e-24
 Identities = 58/102 (56%), Positives = 73/102 (71%)
 Frame = +3

Query: 120 EVVNSLQLLITKGIRXXXXXXXXXIQQCANTNSLQQGKWVHLYLRLTGFKHSHPTTNTLL 299
           E V+SL+ L  +G+R         +Q CA++ +L++GK VHL+L+LTG K       T L
Sbjct: 42  EAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRP----GTFL 97

Query: 300 SNHLIHMYLKCGSDKLARKVFNKMSARNLYSWNNMLSGYAKL 425
           SNHLI+MY KCG +  ARKVF+KMSARNLYSWNNMLSGYAKL
Sbjct: 98  SNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKL 139


>ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g21090 gi|4803934|gb|AAD29807.1| unknown protein
           [Arabidopsis thaliana] gi|330252028|gb|AEC07122.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 597

 Score =  110 bits (274), Expect = 2e-22
 Identities = 54/101 (53%), Positives = 69/101 (68%)
 Frame = +3

Query: 120 EVVNSLQLLITKGIRXXXXXXXXXIQQCANTNSLQQGKWVHLYLRLTGFKHSHPTTNTLL 299
           + V+ L+ L  +GIR         +QQC +T SL+QGKW+H +L++TGFK      NTLL
Sbjct: 29  QAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRP----NTLL 84

Query: 300 SNHLIHMYLKCGSDKLARKVFNKMSARNLYSWNNMLSGYAK 422
           SNHLI MY+KCG    A KVF++M  RNLYSWNNM+SGY K
Sbjct: 85  SNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVK 125


>ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297326194|gb|EFH56614.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 599

 Score =  108 bits (270), Expect = 5e-22
 Identities = 53/101 (52%), Positives = 69/101 (68%)
 Frame = +3

Query: 120 EVVNSLQLLITKGIRXXXXXXXXXIQQCANTNSLQQGKWVHLYLRLTGFKHSHPTTNTLL 299
           + V+ L+ L  +GIR         +QQC +T SL+QGKW+H +L++TGFK      NTLL
Sbjct: 29  QAVSRLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRHLKITGFKRP----NTLL 84

Query: 300 SNHLIHMYLKCGSDKLARKVFNKMSARNLYSWNNMLSGYAK 422
           SNHLI MY+KCG    A KVF++M  RNLYSWNNM+SG+ K
Sbjct: 85  SNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVK 125