BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00038410
         (298 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              123   2e-26
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   123   2e-26
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   122   4e-26
ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E sub...   121   7e-26
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi...   117   1e-24

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  123 bits (308), Expect = 2e-26
 Identities = 62/101 (61%), Positives = 73/101 (72%), Gaps = 2/101 (1%)
 Frame = -2

Query: 297  DSSSSSNASWELMEEILFLKINFINDLNDRRVILYLKDCGCVKKYCKENAAYLIQNLLKR 118
            DSS SSN+SWELM+EIL  ++NF NDL DRRVILYL DC C +KYC+ENAAYL++N LK+
Sbjct: 910  DSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKK 969

Query: 117  VSLRDITVNFQIEY--QRTSPEGSGTNANLVGHIHLDKKLL 1
             SL+D  V F IEY  Q      S     LVGHIHL+K LL
Sbjct: 970  ASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLL 1010


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  123 bits (308), Expect = 2e-26
 Identities = 62/101 (61%), Positives = 73/101 (72%), Gaps = 2/101 (1%)
 Frame = -2

Query: 297  DSSSSSNASWELMEEILFLKINFINDLNDRRVILYLKDCGCVKKYCKENAAYLIQNLLKR 118
            DSS SSN+SWELM+EIL  ++NF NDL DRRVILYL DC C +KYC+ENAAYL++N LK+
Sbjct: 850  DSSPSSNSSWELMKEILLCQVNFKNDLIDRRVILYLNDCDCGRKYCRENAAYLVKNQLKK 909

Query: 117  VSLRDITVNFQIEY--QRTSPEGSGTNANLVGHIHLDKKLL 1
             SL+D  V F IEY  Q      S     LVGHIHL+K LL
Sbjct: 910  ASLKDTAVEFMIEYVKQHAVSGSSEPGTGLVGHIHLNKLLL 950


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  122 bits (305), Expect = 4e-26
 Identities = 59/101 (58%), Positives = 76/101 (75%), Gaps = 2/101 (1%)
 Frame = -2

Query: 297 DSSSSSNASWELMEEILFLKINFINDLNDRRVILYLKDCGCVKKYCKENAAYLIQNLLKR 118
           DSS +SN+SW++M+EILF + NF ND+NDRRVILYL DC C +KYC+ENA+ L++N LK+
Sbjct: 649 DSSPNSNSSWDMMKEILFCRANFRNDINDRRVILYLNDCCCGRKYCQENASCLVKNHLKK 708

Query: 117 VSLRDITVNFQIEYQR--TSPEGSGTNANLVGHIHLDKKLL 1
           VSLRD  +   IEY+R    PE    +A LVGHIHL+  LL
Sbjct: 709 VSLRDAAIELAIEYKRPKLEPESCEIDAGLVGHIHLNSGLL 749


>ref|XP_003545837.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Glycine max]
          Length = 2098

 Score =  121 bits (303), Expect = 7e-26
 Identities = 60/101 (59%), Positives = 76/101 (75%), Gaps = 2/101 (1%)
 Frame = -2

Query: 297  DSSSSSNASWELMEEILFLKINFINDLNDRRVILYLKDCGCVKKYCKENAAYLIQNLLKR 118
            D+S SSN+SWELM+EIL  K+NF N+L DRRVILYL DC C   YC+ENAAY +++ L++
Sbjct: 854  DASPSSNSSWELMKEILLCKVNFRNELVDRRVILYLNDCDCGGSYCRENAAYSVKDQLRK 913

Query: 117  VSLRDITVNFQIEY--QRTSPEGSGTNANLVGHIHLDKKLL 1
            VSL+D  V F IEY  QRT  E S T+  LVGHI+LD+ +L
Sbjct: 914  VSLKDAAVEFIIEYQQQRTQKENSETDVGLVGHIYLDEMML 954


>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
            NRPD1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1947

 Score =  117 bits (293), Expect = 1e-24
 Identities = 57/101 (56%), Positives = 76/101 (75%), Gaps = 2/101 (1%)
 Frame = -2

Query: 297  DSSSSSNASWELMEEILFLKINFINDLNDRRVILYLKDCGCVKKYCKENAAYLIQNLLKR 118
            DS+++SN+SWE M+E+L  K+NF N  NDRRVILYL +C C K++C+ENAAY ++N LK+
Sbjct: 846  DSTANSNSSWEQMKEVLLCKVNFQNTTNDRRVILYLNECHCGKRFCQENAAYTVRNKLKK 905

Query: 117  VSLRDITVNFQIEY--QRTSPEGSGTNANLVGHIHLDKKLL 1
            VSL+D  V F +EY  Q+T  E  G ++ L GHIHLDK LL
Sbjct: 906  VSLKDTAVEFLVEYRKQQTISEIFGIDSCLHGHIHLDKTLL 946