BLASTX nr result
ID: Coptis24_contig00038045
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00038045
(325 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containi... 185 4e-45
emb|CBI26570.3| unnamed protein product [Vitis vinifera] 185 4e-45
emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera] 185 4e-45
ref|XP_002519997.1| pentatricopeptide repeat-containing protein,... 177 6e-43
ref|XP_002309826.1| predicted protein [Populus trichocarpa] gi|2... 175 3e-42
>ref|XP_002275236.2| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Vitis vinifera]
Length = 1442
Score = 185 bits (469), Expect = 4e-45
Identities = 86/108 (79%), Positives = 98/108 (90%)
Frame = -1
Query: 325 LKEAVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNS 146
L+EAVK+YND+ A CQPDLWTYNAM+SVYGRCG + EA RLFK+L SKGFLPDAVTYNS
Sbjct: 310 LEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNS 369
Query: 145 LLYAFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMYGKQGQHDL 2
LLYAFAREGNV +VKEI E+MV+ GFG+DEMTYNT+IHMYGK+GQHDL
Sbjct: 370 LLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDL 417
Score = 61.2 bits (147), Expect = 8e-08
Identities = 30/107 (28%), Positives = 56/107 (52%)
Frame = -1
Query: 325 LKEAVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNS 146
+KEA ++ +++ + +P L T++A++ Y + GK EAE F + G PD + Y+
Sbjct: 450 IKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSV 509
Query: 145 LLYAFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMYGKQGQHD 5
+L R G+ ++ +EMV F D Y M+ + GK+ + +
Sbjct: 510 MLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREE 556
Score = 55.8 bits (133), Expect = 3e-06
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Frame = -1
Query: 316 AVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNSLLY 137
AV+I+ EA+S + YNAM+ VY R G+ T+ + L + S+G PD V++N+L+
Sbjct: 207 AVEIFARAEAASGNT-VQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLIN 265
Query: 136 AFAREGNV--GRVKEIGEEMVQAGFGRDEMTYNTMI 35
A + G + E+ E+ ++G D +TYNT+I
Sbjct: 266 ARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLI 301
>emb|CBI26570.3| unnamed protein product [Vitis vinifera]
Length = 1042
Score = 185 bits (469), Expect = 4e-45
Identities = 86/108 (79%), Positives = 98/108 (90%)
Frame = -1
Query: 325 LKEAVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNS 146
L+EAVK+YND+ A CQPDLWTYNAM+SVYGRCG + EA RLFK+L SKGFLPDAVTYNS
Sbjct: 285 LEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNS 344
Query: 145 LLYAFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMYGKQGQHDL 2
LLYAFAREGNV +VKEI E+MV+ GFG+DEMTYNT+IHMYGK+GQHDL
Sbjct: 345 LLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDL 392
Score = 61.2 bits (147), Expect = 8e-08
Identities = 30/107 (28%), Positives = 56/107 (52%)
Frame = -1
Query: 325 LKEAVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNS 146
+KEA ++ +++ + +P L T++A++ Y + GK EAE F + G PD + Y+
Sbjct: 425 IKEAAEVMSEMLNARVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSV 484
Query: 145 LLYAFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMYGKQGQHD 5
+L R G+ ++ +EMV F D Y M+ + GK+ + +
Sbjct: 485 MLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREE 531
Score = 55.8 bits (133), Expect = 3e-06
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Frame = -1
Query: 316 AVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNSLLY 137
AV+I+ EA+S + YNAM+ VY R G+ T+ + L + S+G PD V++N+L+
Sbjct: 182 AVEIFARAEAASGNT-VQVYNAMMGVYARTGRFTKVQELLDLMRSRGCEPDLVSFNTLIN 240
Query: 136 AFAREGNV--GRVKEIGEEMVQAGFGRDEMTYNTMI 35
A + G + E+ E+ ++G D +TYNT+I
Sbjct: 241 ARLKSGTMVTNLAIELLNEVRRSGIQPDIITYNTLI 276
>emb|CAN76112.1| hypothetical protein VITISV_005527 [Vitis vinifera]
Length = 1494
Score = 185 bits (469), Expect = 4e-45
Identities = 86/108 (79%), Positives = 98/108 (90%)
Frame = -1
Query: 325 LKEAVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNS 146
L+EAVK+YND+ A CQPDLWTYNAM+SVYGRCG + EA RLFK+L SKGFLPDAVTYNS
Sbjct: 342 LEEAVKVYNDMVAHRCQPDLWTYNAMISVYGRCGMSREAGRLFKDLESKGFLPDAVTYNS 401
Query: 145 LLYAFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMYGKQGQHDL 2
LLYAFAREGNV +VKEI E+MV+ GFG+DEMTYNT+IHMYGK+GQHDL
Sbjct: 402 LLYAFAREGNVDKVKEICEDMVKMGFGKDEMTYNTIIHMYGKRGQHDL 449
Score = 61.2 bits (147), Expect = 8e-08
Identities = 30/107 (28%), Positives = 56/107 (52%)
Frame = -1
Query: 325 LKEAVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNS 146
+KEA ++ +++ + +P L T++A++ Y + GK EAE F + G PD + Y+
Sbjct: 482 IKEAAEVMSEMLNAXVKPTLRTFSALICGYAKAGKRVEAEETFDCMLRSGIKPDHLAYSV 541
Query: 145 LLYAFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMYGKQGQHD 5
+L R G+ ++ +EMV F D Y M+ + GK+ + +
Sbjct: 542 MLDILLRFNESGKAMKLYQEMVLHSFKPDHALYEVMLRVLGKENREE 588
>ref|XP_002519997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223540761|gb|EEF42321.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 1429
Score = 177 bits (450), Expect = 6e-43
Identities = 84/108 (77%), Positives = 96/108 (88%)
Frame = -1
Query: 325 LKEAVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNS 146
L+EAVK+++D+EA CQPDLWTYNAM+SVYGRCG + +AE+LFKEL SKG+ PDAVTYNS
Sbjct: 298 LEEAVKVFDDMEAHYCQPDLWTYNAMISVYGRCGFSGKAEQLFKELESKGYFPDAVTYNS 357
Query: 145 LLYAFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMYGKQGQHDL 2
LLYAFAREGNV +VKEI EMVQ GF RDEMTYNT+IHMYGKQGQH L
Sbjct: 358 LLYAFAREGNVDKVKEICNEMVQMGFIRDEMTYNTIIHMYGKQGQHGL 405
Score = 59.7 bits (143), Expect = 2e-07
Identities = 33/105 (31%), Positives = 53/105 (50%)
Frame = -1
Query: 322 KEAVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNSL 143
++ V+IY ++ QPD TYN ++ +Y R + E L E+ G P TY SL
Sbjct: 927 RKTVQIYQRIKEDGLQPDEDTYNTLIVMYCRDHRPEEGCSLMHEMRRIGLEPKLDTYKSL 986
Query: 142 LYAFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMYGKQGQH 8
+ AF ++ V +E+ EE++ G D Y+ M+ +Y G H
Sbjct: 987 IAAFGKQQLVVDAEELFEELLSKGSKLDRSFYHIMMKIYRNSGNH 1031
Score = 56.2 bits (134), Expect = 3e-06
Identities = 27/97 (27%), Positives = 52/97 (53%)
Frame = -1
Query: 316 AVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNSLLY 137
A+++Y D++ S PD TY ++ G+ K EA + E+ + G P TY++L+
Sbjct: 406 ALQLYRDMKLSGRTPDAITYTVLIDSLGKANKMVEAANVMSEMLNIGVKPTLRTYSALIC 465
Query: 136 AFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMY 26
+AR G +E + M ++G D++ Y+ M+ ++
Sbjct: 466 GYARAGQRLEAEETFDCMRRSGIRPDQLAYSVMLDVF 502
Score = 55.5 bits (132), Expect = 5e-06
Identities = 29/103 (28%), Positives = 49/103 (47%)
Frame = -1
Query: 319 EAVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNSLL 140
EA + +++ +P L TY+A++ Y R G+ EAE F + G PD + Y+ +L
Sbjct: 440 EAANVMSEMLNIGVKPTLRTYSALICGYARAGQRLEAEETFDCMRRSGIRPDQLAYSVML 499
Query: 139 YAFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMYGKQGQ 11
F R + + EMV+ G D Y M+ G++ +
Sbjct: 500 DVFLRFDEATKAMMLYREMVRDGITPDPTVYGAMLRNLGRENK 542
Score = 54.7 bits (130), Expect = 8e-06
Identities = 29/100 (29%), Positives = 51/100 (51%)
Frame = -1
Query: 325 LKEAVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNS 146
+ EA KIY ++A+ P + Y M+ + + + + E + E+ GF PD +NS
Sbjct: 856 IAEAKKIYQGMKAAGYFPTMHLYRIMIGLLCKGKRVRDVEAMVTEMEEAGFRPDLSIWNS 915
Query: 145 LLYAFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMY 26
+L + + + +I + + + G DE TYNT+I MY
Sbjct: 916 MLRLYTGIDDFRKTVQIYQRIKEDGLQPDEDTYNTLIVMY 955
>ref|XP_002309826.1| predicted protein [Populus trichocarpa] gi|222852729|gb|EEE90276.1|
predicted protein [Populus trichocarpa]
Length = 1480
Score = 175 bits (444), Expect = 3e-42
Identities = 80/108 (74%), Positives = 97/108 (89%)
Frame = -1
Query: 325 LKEAVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNS 146
L+EA K+++D+EA CQPDLWTYNAM+SVYGRCG + +AE+LF +L S+GF PDAV+YNS
Sbjct: 342 LEEAAKVFDDMEAHHCQPDLWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNS 401
Query: 145 LLYAFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMYGKQGQHDL 2
LLYAFAREGNV +VKEI EEMV+ GFG+DEMTYNTMIHMYGKQGQ++L
Sbjct: 402 LLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNEL 449
Score = 59.7 bits (143), Expect = 2e-07
Identities = 30/105 (28%), Positives = 54/105 (51%)
Frame = -1
Query: 322 KEAVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNSL 143
++ +++Y ++ +PD TYN ++ +Y R + E L E+ G P TY SL
Sbjct: 970 RKTIQVYQRIKEDGLEPDEDTYNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSL 1029
Query: 142 LYAFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMYGKQGQH 8
+ +F ++ V + +E+ EE+ G D Y+TM+ +Y G H
Sbjct: 1030 VASFGKQQLVEQAEELFEELQSKGCKLDRSFYHTMMKIYRNSGSH 1074
Score = 57.8 bits (138), Expect = 9e-07
Identities = 26/97 (26%), Positives = 53/97 (54%)
Frame = -1
Query: 316 AVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNSLLY 137
A+++Y D+++S PD TY ++ G+ K EA + E+ + G P TY++L+
Sbjct: 450 ALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALIC 509
Query: 136 AFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMY 26
+A+ G +E + M+++G D + Y+ M+ ++
Sbjct: 510 GYAKAGKPVEAEETFDCMLRSGIRPDHLAYSVMLDIH 546
Score = 55.8 bits (133), Expect = 3e-06
Identities = 29/105 (27%), Positives = 54/105 (51%)
Frame = -1
Query: 325 LKEAVKIYNDLEASSCQPDLWTYNAMLSVYGRCGKATEAERLFKELGSKGFLPDAVTYNS 146
+++ +I+ ++ D TYN M+ +YG+ G+ A +L++++ S G PDAVTY
Sbjct: 412 VEKVKEIWEEMVKIGFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTV 471
Query: 145 LLYAFAREGNVGRVKEIGEEMVQAGFGRDEMTYNTMIHMYGKQGQ 11
L+ + + + + EM+ G TY+ +I Y K G+
Sbjct: 472 LIDSLGKTNKIAEAAGVMSEMLNTGVKPTLKTYSALICGYAKAGK 516