BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037780
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              181   7e-44
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   181   7e-44
gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycope...   177   6e-43
ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|2...   176   2e-42
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   175   3e-42

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  181 bits (458), Expect = 7e-44
 Identities = 85/111 (76%), Positives = 97/111 (87%)
 Frame = +2

Query: 5    GDAWRLALDSCLPVIHLIDTARSIPYGIRQVQELLGISCAFDQAVLRLSSSIRKVNKGVL 184
            GDAWR+ LD+CLPV+HLIDT RSIPY I+QVQELLGISCAFDQAV RLS S+  V KGVL
Sbjct: 1148 GDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVL 1207

Query: 185  KKHLLLAANSMTCTGSLIGFNKAGYKALFRSLDVHIPFTEATLFTPRKCFE 337
            K+HL+L ANSMTC G+LIGFN  GYKAL R+L++ +PFTEATLFTPRKCFE
Sbjct: 1208 KEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFE 1258


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  181 bits (458), Expect = 7e-44
 Identities = 85/111 (76%), Positives = 97/111 (87%)
 Frame = +2

Query: 5    GDAWRLALDSCLPVIHLIDTARSIPYGIRQVQELLGISCAFDQAVLRLSSSIRKVNKGVL 184
            GDAWR+ LD+CLPV+HLIDT RSIPY I+QVQELLGISCAFDQAV RLS S+  V KGVL
Sbjct: 1088 GDAWRIVLDACLPVLHLIDTRRSIPYAIKQVQELLGISCAFDQAVQRLSKSVTMVAKGVL 1147

Query: 185  KKHLLLAANSMTCTGSLIGFNKAGYKALFRSLDVHIPFTEATLFTPRKCFE 337
            K+HL+L ANSMTC G+LIGFN  GYKAL R+L++ +PFTEATLFTPRKCFE
Sbjct: 1148 KEHLILLANSMTCAGNLIGFNSGGYKALSRALNLQVPFTEATLFTPRKCFE 1198


>gb|AAY89359.1| RNA polymerase IV largest subunit [Solanum lycopersicum]
          Length = 1127

 Score =  177 bits (450), Expect = 6e-43
 Identities = 85/111 (76%), Positives = 95/111 (85%)
 Frame = +2

Query: 5   GDAWRLALDSCLPVIHLIDTARSIPYGIRQVQELLGISCAFDQAVLRLSSSIRKVNKGVL 184
           GDAWR  +DSCLPVIHLIDT RSIPY I+QVQEL+GISCAF+QAV RLS+S+  V KGVL
Sbjct: 639 GDAWRXLMDSCLPVIHLIDTTRSIPYAIKQVQELIGISCAFEQAVXRLSTSVTMVTKGVL 698

Query: 185 KKHLLLAANSMTCTGSLIGFNKAGYKALFRSLDVHIPFTEATLFTPRKCFE 337
           K HL+L ANSMTC G+L+GFN  G KAL RSL+V IPFTEATLFTPRKCFE
Sbjct: 699 KDHLVLLANSMTCAGNLVGFNAGGIKALSRSLNVQIPFTEATLFTPRKCFE 749


>ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|222841358|gb|EEE78905.1|
           predicted protein [Populus trichocarpa]
          Length = 1020

 Score =  176 bits (446), Expect = 2e-42
 Identities = 83/111 (74%), Positives = 93/111 (83%)
 Frame = +2

Query: 5   GDAWRLALDSCLPVIHLIDTARSIPYGIRQVQELLGISCAFDQAVLRLSSSIRKVNKGVL 184
           GDAWR+ LDSCLPV+HLI+T RSIPY I+QVQELLG+SCAFD AV RLS S+  V KGVL
Sbjct: 189 GDAWRIVLDSCLPVLHLINTTRSIPYAIKQVQELLGVSCAFDTAVQRLSKSVTMVAKGVL 248

Query: 185 KKHLLLAANSMTCTGSLIGFNKAGYKALFRSLDVHIPFTEATLFTPRKCFE 337
           K+HL+L  NSMTC GSLIGF   GYK L RSLD+ +PFTEATLFTPRKCFE
Sbjct: 249 KEHLILLGNSMTCAGSLIGFYTGGYKTLSRSLDIQVPFTEATLFTPRKCFE 299


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  175 bits (444), Expect = 3e-42
 Identities = 81/112 (72%), Positives = 95/112 (84%)
 Frame = +2

Query: 2    HGDAWRLALDSCLPVIHLIDTARSIPYGIRQVQELLGISCAFDQAVLRLSSSIRKVNKGV 181
            +GDAWR  LD CLPV+HLIDT RS+PY I+QVQELLGISCAFDQ + RLS S+  V+KGV
Sbjct: 1082 NGDAWRNVLDCCLPVLHLIDTRRSVPYAIKQVQELLGISCAFDQMIQRLSKSVSMVSKGV 1141

Query: 182  LKKHLLLAANSMTCTGSLIGFNKAGYKALFRSLDVHIPFTEATLFTPRKCFE 337
            L  HL+L ANSMTCTG++IGFN  GYKAL R+L++ +PFTEATLFTPRKCFE
Sbjct: 1142 LGDHLILLANSMTCTGNMIGFNSGGYKALSRALNIQVPFTEATLFTPRKCFE 1193