BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037736
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]               89   5e-16
ref|NP_175959.1| pentatricopeptide repeat-containing protein [Ar...    89   5e-16
ref|NP_001065010.1| Os10g0506000 [Oryza sativa Japonica Group] g...    85   5e-15
ref|XP_002894516.1| pentatricopeptide repeat-containing protein ...    85   5e-15
emb|CBI22748.3| unnamed protein product [Vitis vinifera]               85   5e-15

>gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
          Length = 554

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 41/84 (48%), Positives = 59/84 (70%)
 Frame = -3

Query: 255 SSQLSDDDEQNDTGESFSPRRRFFEDVRFSVDRVIEVLQQDGPGFDTKLALDELRLRVSN 76
           SS++  + +Q + GE  S R+RF E  + S  RV++ LQQD PGF+TK ALDEL + +S 
Sbjct: 127 SSEMDCEFDQEENGEKISVRKRFMESTKLSASRVLDTLQQDCPGFNTKSALDELNVSISG 186

Query: 75  YLVREVLIRVLKSIHHSNKSRCAK 4
            LVREVL+ +L+++   NK+RCAK
Sbjct: 187 LLVREVLVGILRTLSFDNKTRCAK 210


>ref|NP_175959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75140283|sp|Q7X6A5.1|PPR81_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g55630 gi|30793841|gb|AAP40373.1| unknown protein
           [Arabidopsis thaliana] gi|30794021|gb|AAP40457.1|
           unknown protein [Arabidopsis thaliana]
           gi|110739296|dbj|BAF01561.1| hypothetical protein
           [Arabidopsis thaliana] gi|332195155|gb|AEE33276.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 477

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 41/84 (48%), Positives = 59/84 (70%)
 Frame = -3

Query: 255 SSQLSDDDEQNDTGESFSPRRRFFEDVRFSVDRVIEVLQQDGPGFDTKLALDELRLRVSN 76
           SS++  + +Q + GE  S R+RF E  + S  RV++ LQQD PGF+TK ALDEL + +S 
Sbjct: 50  SSEMDCEFDQEENGEKISVRKRFMESTKLSASRVLDTLQQDCPGFNTKSALDELNVSISG 109

Query: 75  YLVREVLIRVLKSIHHSNKSRCAK 4
            LVREVL+ +L+++   NK+RCAK
Sbjct: 110 LLVREVLVGILRTLSFDNKTRCAK 133


>ref|NP_001065010.1| Os10g0506000 [Oryza sativa Japonica Group]
           gi|31432949|gb|AAP54520.1| pentatricopeptide, putative
           [Oryza sativa Japonica Group] gi|62733610|gb|AAX95727.1|
           hypothetical protein [Oryza sativa Japonica Group]
           gi|113639619|dbj|BAF26924.1| Os10g0506000 [Oryza sativa
           Japonica Group] gi|125575336|gb|EAZ16620.1| hypothetical
           protein OsJ_32092 [Oryza sativa Japonica Group]
          Length = 507

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 45/101 (44%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
 Frame = -3

Query: 297 LDWKPIGDDTLLGVSSQLSDDDEQNDTGESFSP------RRRFFEDVRFSVDRVIEVLQQ 136
           LD   +  + LL + +     +  +D GE+ SP      RRRFFE++R   DR++++L Q
Sbjct: 60  LDGGRVPQEVLLRLPTPPGRAETDDDDGENLSPGAGSGSRRRFFEELRLKADRIVKILLQ 119

Query: 135 DGPGFDTKLALDELRLRVSNYLVREVLIRVLKSIHHSNKSR 13
           DGPGF+T+ ALDE+R RVSN LVREVL++ + SI   N++R
Sbjct: 120 DGPGFNTRQALDEMRPRVSNALVREVLLKFVVSIDGVNRAR 160


>ref|XP_002894516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297340358|gb|EFH70775.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 477

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 39/84 (46%), Positives = 58/84 (69%)
 Frame = -3

Query: 255 SSQLSDDDEQNDTGESFSPRRRFFEDVRFSVDRVIEVLQQDGPGFDTKLALDELRLRVSN 76
           SS++    ++ + GE  S RRRF E  +    RV++ LQQD PGF+TK ALD+L + +S 
Sbjct: 50  SSEMDCGFDEEEHGEKISVRRRFMESAKLGASRVLDTLQQDCPGFNTKSALDDLNVTISG 109

Query: 75  YLVREVLIRVLKSIHHSNKSRCAK 4
            LVREVL+ +L+++ + NK+RCAK
Sbjct: 110 LLVREVLVGILRTLSYDNKTRCAK 133


>emb|CBI22748.3| unnamed protein product [Vitis vinifera]
          Length = 518

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 42/101 (41%), Positives = 66/101 (65%), Gaps = 6/101 (5%)
 Frame = -3

Query: 288 KPIGDDTLLGVSSQLSDDDEQNDTG------ESFSPRRRFFEDVRFSVDRVIEVLQQDGP 127
           KP+ +   +     +SD++  +D G        F   + +F+++R    RV+++LQQD P
Sbjct: 74  KPLSEAWGVSNFDPVSDENPDSDNGIGSSSPAEFLAGKGYFDNMRLDASRVLQILQQDCP 133

Query: 126 GFDTKLALDELRLRVSNYLVREVLIRVLKSIHHSNKSRCAK 4
           GF TK ALDEL++RVS  LVREVL+ +LK+++++NK RCAK
Sbjct: 134 GFSTKAALDELQIRVSGGLVREVLLEILKTVNYTNKERCAK 174