BLASTX nr result
ID: Coptis24_contig00037595
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00037595
(299 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containi... 115 3e-24
ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group] g... 111 7e-23
emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group] 111 7e-23
gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays] 108 6e-22
ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group] g... 107 1e-21
>ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 115 bits (289), Expect = 3e-24
Identities = 50/99 (50%), Positives = 66/99 (66%)
Frame = -2
Query: 298 YWWNQIIKADVSNGYQGNAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQCVWRAVLVHSA 119
+WWN +I+ V G + YC M L W PD +T+PFVLKACGEI + VH+
Sbjct: 93 FWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGASVHAI 152
Query: 118 VCRSGYESNVFVCNALVAMYARCGELDEAVKVFDEVSQR 2
VC +G SNVF+CN++VAMY RCG LD+A ++FDEV +R
Sbjct: 153 VCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLER 191
Score = 65.9 bits (159), Expect = 3e-09
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Frame = -2
Query: 292 WNQIIKADVSNGYQGNAFNLYCLM---LSLNWKPDGFTYPFVLKACGEIQCVWRAVLVHS 122
WN I+ A V G A + M SL +PD T +L AC + + VH
Sbjct: 199 WNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHG 258
Query: 121 AVCRSGYESNVFVCNALVAMYARCGELDEAVKVFDEVSQR 2
R+G +VFV NALV+MYA+C +++EA KVF+ + ++
Sbjct: 259 FSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKK 298
>ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial
[Oryza sativa Japonica Group]
Length = 890
Score = 111 bits (277), Expect = 7e-23
Identities = 49/98 (50%), Positives = 65/98 (66%)
Frame = -2
Query: 295 WWNQIIKADVSNGYQGNAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQCVWRAVLVHSAV 116
WWN +I+ + G +A N+ C ML +PD FT P VLKACGE+ H +
Sbjct: 122 WWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLI 181
Query: 115 CRSGYESNVFVCNALVAMYARCGELDEAVKVFDEVSQR 2
C +G+ESNVF+CNALVAMY+RCG L+EA +FDE++QR
Sbjct: 182 CCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 219
Score = 59.3 bits (142), Expect = 3e-07
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Frame = -2
Query: 292 WNQIIKADVSNGYQGNAFNLYCLMLSL------NWKPDGFTYPFVLKACGEIQCVWRAVL 131
WN I+ A V + A +L+ M + N + D + +L ACG ++ V +
Sbjct: 227 WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE 286
Query: 130 VHSAVCRSGYESNVFVCNALVAMYARCGELDEAVKVFD 17
VH R+G +VFV NAL+ YA+CG ++ AVKVF+
Sbjct: 287 VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFN 324
Score = 56.2 bits (134), Expect = 3e-06
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Frame = -2
Query: 292 WNQIIKADVSNGYQGNAFNLYCLMLSLNW--KPDGFTYPFVLKACGEIQCVWRAVLVHSA 119
W +I G +A L+ M+S + P+ +T +L AC + + +H+
Sbjct: 482 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 541
Query: 118 VCRSG-YESNV-FVCNALVAMYARCGELDEAVKVFDEVSQR 2
V R YES+ FV N L+ MY++CG++D A VFD +SQ+
Sbjct: 542 VLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK 582
>emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 111 bits (277), Expect = 7e-23
Identities = 49/98 (50%), Positives = 65/98 (66%)
Frame = -2
Query: 295 WWNQIIKADVSNGYQGNAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQCVWRAVLVHSAV 116
WWN +I+ + G +A N+ C ML +PD FT P VLKACGE+ H +
Sbjct: 129 WWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTLPHVLKACGELPSYRCGSAFHGLI 188
Query: 115 CRSGYESNVFVCNALVAMYARCGELDEAVKVFDEVSQR 2
C +G+ESNVF+CNALVAMY+RCG L+EA +FDE++QR
Sbjct: 189 CCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 226
Score = 59.3 bits (142), Expect = 3e-07
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Frame = -2
Query: 292 WNQIIKADVSNGYQGNAFNLYCLMLSL------NWKPDGFTYPFVLKACGEIQCVWRAVL 131
WN I+ A V + A +L+ M + N + D + +L ACG ++ V +
Sbjct: 234 WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE 293
Query: 130 VHSAVCRSGYESNVFVCNALVAMYARCGELDEAVKVFD 17
VH R+G +VFV NAL+ YA+CG ++ AVKVF+
Sbjct: 294 VHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFN 331
Score = 56.2 bits (134), Expect = 3e-06
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Frame = -2
Query: 292 WNQIIKADVSNGYQGNAFNLYCLMLSLNW--KPDGFTYPFVLKACGEIQCVWRAVLVHSA 119
W +I G +A L+ M+S + P+ +T +L AC + + +H+
Sbjct: 489 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 548
Query: 118 VCRSG-YESNV-FVCNALVAMYARCGELDEAVKVFDEVSQR 2
V R YES+ FV N L+ MY++CG++D A VFD +SQ+
Sbjct: 549 VLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQK 589
>gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 108 bits (269), Expect = 6e-22
Identities = 46/98 (46%), Positives = 65/98 (66%)
Frame = -2
Query: 295 WWNQIIKADVSNGYQGNAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQCVWRAVLVHSAV 116
WWN +++ + G+ A + C ML KPD FT P+ LKACGE+ +H +
Sbjct: 116 WWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYCCGRALHGLI 175
Query: 115 CRSGYESNVFVCNALVAMYARCGELDEAVKVFDEVSQR 2
C +G+ESNVFVCNALVAMY+RCG L++A VFDE++++
Sbjct: 176 CCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRK 213
Score = 60.5 bits (145), Expect = 1e-07
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Frame = -2
Query: 292 WNQIIKADVSNGYQGNAFNLYCLMLSL------NWKPDGFTYPFVLKACGEIQCVWRAVL 131
WN I+ A V A L+ M + N + D + +L AC ++ + +
Sbjct: 221 WNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKE 280
Query: 130 VHSAVCRSGYESNVFVCNALVAMYARCGELDEAVKVFD 17
+HS R+G ++ FVCNAL+ YA+CG +++AVKVF+
Sbjct: 281 IHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFN 318
>ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa
Japonica Group]
Length = 852
Score = 107 bits (267), Expect = 1e-21
Identities = 48/98 (48%), Positives = 64/98 (65%)
Frame = -2
Query: 295 WWNQIIKADVSNGYQGNAFNLYCLMLSLNWKPDGFTYPFVLKACGEIQCVWRAVLVHSAV 116
WWN +I+ + G +A N+ C ML + D FT P VLKACGE+ H +
Sbjct: 84 WWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLI 143
Query: 115 CRSGYESNVFVCNALVAMYARCGELDEAVKVFDEVSQR 2
C +G+ESNVF+CNALVAMY+RCG L+EA +FDE++QR
Sbjct: 144 CCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 181
Score = 58.9 bits (141), Expect = 4e-07
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Frame = -2
Query: 292 WNQIIKADVSNGYQGNAFNLYCLMLSL------NWKPDGFTYPFVLKACGEIQCVWRAVL 131
WN I+ A V + A +L+ M + N + D + +L ACG ++ V +
Sbjct: 189 WNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKE 248
Query: 130 VHSAVCRSGYESNVFVCNALVAMYARCGELDEAVKVFD 17
VH R+G +VFV NAL+ YA+CG ++ AVKVF+
Sbjct: 249 VHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 286
Score = 55.1 bits (131), Expect = 6e-06
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Frame = -2
Query: 292 WNQIIKADVSNGYQGNAFNLYCLMLSLNW--KPDGFTYPFVLKACGEIQCVWRAVLVHSA 119
W +I G +A L+ M+S + P+ +T +L AC + + +H+
Sbjct: 444 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 503
Query: 118 VCRSG-YESNV-FVCNALVAMYARCGELDEAVKVFDEVSQR 2
V R Y+S+ FV N L+ MY++CG++D A VFD +SQ+
Sbjct: 504 VLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQK 544