BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037571
         (327 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    65   8e-09
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    63   2e-08
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]                 63   3e-08
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    57   2e-06
gb|AAD22330.1| putative non-LTR retroelement reverse transcripta...    57   2e-06

>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 4/110 (3%)
 Frame = -3

Query: 322  LIYKIACKDSGIWITWTWAEHIKENFFWTMSVPKDC-SWTWRSILNNRKNAMKLLRYSIT 146
            LI+++  + S +W+ W W   I++  FW+ +      SW W+ +LN R  A  + +  I 
Sbjct: 1032 LIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLNYRDVAKSMCKVEIK 1091

Query: 145  TGE*TLLWHDPWCMANSLINIPAAKD--NLHFPLNAKV-SILITDRVWNH 5
            +G  T  W+D W     L+++  A+   ++  PL A V ++L + R   H
Sbjct: 1092 SGSSTSFWYDNWSQLRQLVDVTNARRTIDMGIPLAATVATVLASHRTKQH 1141


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = -3

Query: 298 DSGIWITWTWAEHIKENFFWTMSVPKDCSWTWRSILNNRKNAMKLLRYSITTGE*TLLWH 119
           D  IW TW  +  ++   FWT+  P++CSW W  IL  R  A   ++Y I  G  T LW 
Sbjct: 186 DGSIWSTWIRSNLLRGRNFWTIKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWF 245

Query: 118 DPWCMANSLINIPAAK--DNLHFPLNAKVSILITDRVW 11
           D W   + L +    +   +     NAKV++LI +  W
Sbjct: 246 DNWHPHSPLADSYGERFIYDSGMAKNAKVNVLIQNSEW 283


>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
          Length = 740

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
 Frame = -3

Query: 322 LIYKIACKDSGIWITWTWAEHIKENFFWTMSVPKDC-SWTWRSILNNRKNAMKLLRYSIT 146
           LI+++  + S +W+ W W   I++  FW+ +      SW W+ +L  R  A  + +  I 
Sbjct: 463 LIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSLGSWMWKKLLKYRDVAKSMCKVEIK 522

Query: 145 TGE*TLLWHDPWCMANSLINIPAAKD--NLHFPLNAKVSILITDRVWNH 5
           +G  T  W+D W     L+++  A+   ++  PL A V+ ++      H
Sbjct: 523 SGSSTSFWYDNWSQLGQLVDVTNARRTIDMGIPLAATVATVLASHRTKH 571


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = -3

Query: 322 LIYKIACKDSGIWITWTWAEHIKENFFWTMSVPKDCSWTWRSILNNRKNAMKLLRYSITT 143
           LI++I  +   +W+ W     +K N FW+       SW W+ +L  R  A    +  I  
Sbjct: 408 LIWRIVSQGDSLWVQWIRTYLLKRNTFWSFRSASQGSWMWKKLLKYRDTAKAFSKVDIRN 467

Query: 142 GE*TLLWHDPWCMANSLINI 83
           GE    W+D W     LI++
Sbjct: 468 GETASFWYDDWSSKGRLIDV 487


>gb|AAD22330.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 631

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 4/99 (4%)
 Frame = -3

Query: 289 IWITWTWAEHIKENFFWTMSVPKDC-SWTWRSILNNRKNAMKLLRYSITTGE*TLLWHDP 113
           +W+ W W   I++  FW+ +      SW W+ +L  R+ A  + +    +G  T  W+D 
Sbjct: 365 LWVNWVWTYIIRKGSFWSTNDRSSLGSWMWKKLLKYREVAKTMCKVETRSGSSTSFWYDN 424

Query: 112 WCMANSLINIPAAKD--NLHFPLNAKV-SILITDRVWNH 5
           W     L++I  A+   N+  PL A V ++L + R   H
Sbjct: 425 WSQLGQLVDITNARRTINMGIPLEATVETVLASHRTRRH 463