BLASTX nr result
ID: Coptis24_contig00037561
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00037561
(655 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EEE61581.1| hypothetical protein OsJ_15963 [Oryza sativa Japo... 106 4e-21
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 104 1e-20
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ... 102 8e-20
emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulga... 100 4e-19
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1... 99 5e-19
>gb|EEE61581.1| hypothetical protein OsJ_15963 [Oryza sativa Japonica Group]
Length = 1494
Score = 106 bits (264), Expect = 4e-21
Identities = 58/207 (28%), Positives = 106/207 (51%)
Frame = +1
Query: 34 FYEMWLKDPSCKPLIADAWEPHNNGEPDVTAIAKLARTRNKLRKWNKEHFGNVFTNIRNI 213
F +W + S + ++W+ + KLA T L++W+++ GN+ +I
Sbjct: 492 FEAVWERVKSFNSIEHESWDDGGLAKNLGDVRTKLAYTMENLKRWSRDKIGNIKKSIERC 551
Query: 214 QHELEAVSSSNFTEETYXXXXXXXXXXXEWMDKEESMWRQKSAIHWMRDGGRNTKFFHLS 393
+ ELE + E++ E + +EE W+Q+S I W+++G RNT++FHL
Sbjct: 552 RRELEEMRMRG-REDSEPDVHRLKIFLQELLHREEIWWKQRSRITWLKEGDRNTRYFHLK 610
Query: 394 TIYRRRKNQIDKIKDGFGNWQAGRFNVGKTMNAYFNDIFSTDDPNTCPEIFDMFEPCISD 573
+R RKN I K++ G + +G+ ++F D+++ D+ E+ +MFEP I+D
Sbjct: 611 ASWRARKNLIKKLRRSDGMMCSKEEELGEIARSFFRDLYTKDESLNPGELLNMFEPKITD 670
Query: 574 RENSLLTDIPSADDIWAVVKNMGSLKA 654
N +LT + ++I + +G LKA
Sbjct: 671 EMNGMLTKPFTDEEISDALFQIGPLKA 697
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 104 bits (260), Expect = 1e-20
Identities = 59/212 (27%), Positives = 102/212 (48%)
Frame = +1
Query: 19 NKPFRFYEMWLKDPSCKPLIADAWEPHNNGEPDVTAIAKLARTRNKLRKWNKEHFGNVFT 198
+K FRF MWL++ ++ + W + A LART NKL W+K+ FG+V
Sbjct: 249 SKRFRFEAMWLREGESDEVVKETWMRGTD------AGINLARTANKLLSWSKQKFGHVAK 302
Query: 199 NIRNIQHELEAVSSSNFTEETYXXXXXXXXXXXEWMDKEESMWRQKSAIHWMRDGGRNTK 378
IR QH+++ + S +E+ E +EE W Q+S W++ G +NTK
Sbjct: 303 EIRMCQHQMKVLMESEPSEDNIMHMRALDARMDELEKREEVYWHQRSRQDWIKSGDKNTK 362
Query: 379 FFHLSTIYRRRKNQIDKIKDGFGNWQAGRFNVGKTMNAYFNDIFSTDDPNTCPEIFDMFE 558
FFH +R ++N + +I++ G W +V + YF ++F + + I ++ +
Sbjct: 363 FFHQKASHREQRNNVRRIRNEAGEWFEDEDDVTECFAHYFENLFQSGNNCEMDPILNIVK 422
Query: 559 PCISDRENSLLTDIPSADDIWAVVKNMGSLKA 654
P I+D + L +++ A + M KA
Sbjct: 423 PQITDELGTQLDAPFRREEVSAALAQMHPNKA 454
>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1656
Score = 102 bits (253), Expect = 8e-20
Identities = 54/209 (25%), Positives = 98/209 (46%)
Frame = +1
Query: 28 FRFYEMWLKDPSCKPLIADAWEPHNNGEPDVTAIAKLARTRNKLRKWNKEHFGNVFTNIR 207
FRF +MW +I +W P G + L L+ W+KE F N +
Sbjct: 847 FRFEQMWTTHEEYSDVIQRSWPPAFGGSAMRSWNRNLLSCGKALKMWSKEKFSNPSVQVA 906
Query: 208 NIQHELEAVSSSNFTEETYXXXXXXXXXXXEWMDKEESMWRQKSAIHWMRDGGRNTKFFH 387
++ ++E + SN + + W ++E W Q+S ++W++ G +N+ FFH
Sbjct: 907 DLLSDIEKLHQSNPPDAHHQINILTDQVTKLWT-QDEMYWHQRSRVNWLKLGDQNSSFFH 965
Query: 388 LSTIYRRRKNQIDKIKDGFGNWQAGRFNVGKTMNAYFNDIFSTDDPNTCPEIFDMFEPCI 567
+TI RR+ N+I ++KD GNW +V YF ++ ++ P E+ D + +
Sbjct: 966 QTTIQRRQYNKIVRLKDDHGNWLDSEADVALQFLDYFTALYQSNGPQQWEEVLDFVDTAV 1025
Query: 568 SDRENSLLTDIPSADDIWAVVKNMGSLKA 654
+ N +L+ S ++ V ++G+ KA
Sbjct: 1026 TAEMNKILSSPVSLLEVKKAVFDLGATKA 1054
>emb|CCA66180.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1383
Score = 99.8 bits (247), Expect = 4e-19
Identities = 61/216 (28%), Positives = 102/216 (47%), Gaps = 5/216 (2%)
Frame = +1
Query: 22 KPFRFYEMWLKDPSCKPLIADAWEPHNNGEPDVTAIAKLARTRNKLRKWNKEHFGNVFTN 201
KPFRF WL DP C ++ +W + P ++ + KL T+ +L++WN FG++ N
Sbjct: 238 KPFRFNNCWLTDPKCMKIVEASW----SSSPKISVVEKLKETKKRLKEWNLNEFGSIDAN 293
Query: 202 IRNIQHEL----EAVSSSNFTEETYXXXXXXXXXXXEWMDKEESMWRQKSAIHWMRDGGR 369
IR ++ + + +E +WM ++E W Q+S I W++ G +
Sbjct: 294 IRKLEDCIANFDKEADERELDKEELEKRREAQADLWKWMKRKEIYWAQRSRITWLKAGDK 353
Query: 370 NTKFFHLSTIYRRRKNQIDKIKDGFGNWQAGRFNVGKTMNAYFNDIFSTDDPNTCPEIFD 549
NTKFFH ++RKN + I+ G + K A+F IF D P + +
Sbjct: 354 NTKFFHAIASNKKRKNMMACIETD-GQSTNDPSQIKKEARAFFKKIFKEDHVKR-PTLEN 411
Query: 550 MFEPCISDRE-NSLLTDIPSADDIWAVVKNMGSLKA 654
+ +S + NSL+T + ++I V + S KA
Sbjct: 412 LHLKRLSQNQANSLITPF-TTEEIDTAVSSCASDKA 446
>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) -
Arabidopsis thaliana retrotransposon Ta11-1
gi|976278|gb|AAA75254.1| reverse transcriptase
[Arabidopsis thaliana]
Length = 1333
Score = 99.4 bits (246), Expect = 5e-19
Identities = 60/197 (30%), Positives = 89/197 (45%)
Frame = +1
Query: 28 FRFYEMWLKDPSCKPLIADAWEPHNNGEPDVTAIAKLARTRNKLRKWNKEHFGNVFTNIR 207
FRF + P+ K I AW E ++ + KL R+ L +W KE+ N T I
Sbjct: 242 FRFDKRLFNQPNVKETIVQAWNGSQRNE-NLLVLDKLKHCRSALSRWKKENNINSSTRIT 300
Query: 208 NIQHELEAVSSSNFTEETYXXXXXXXXXXXEWMDKEESMWRQKSAIHWMRDGGRNTKFFH 387
+ LE SS F EE W QKS WM G +NT FFH
Sbjct: 301 QARAALELEQSSGFPRADLVFSLKNDLCKAN--HDEEVFWSQKSRAKWMHSGDKNTSFFH 358
Query: 388 LSTIYRRRKNQIDKIKDGFGNWQAGRFNVGKTMNAYFNDIFSTDDPNTCPEIFDMFEPCI 567
S R K ID++ D G + N G AYF+D+F + DP++ ++F+ ++P +
Sbjct: 359 ASVKDNRGKQHIDQLCDVNGLFHKDEMNKGAIAEAYFSDLFKSTDPSSFVDLFEDYQPRV 418
Query: 568 SDRENSLLTDIPSADDI 618
++ N+ L S ++I
Sbjct: 419 TESMNNTLIAAVSKNEI 435