BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037555
         (389 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containi...   103   1e-20
ref|XP_002510717.1| pentatricopeptide repeat-containing protein,...    95   7e-18
emb|CBI40755.3| unnamed protein product [Vitis vinifera]               81   8e-14
ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containi...    74   1e-11
ref|XP_003589765.1| Pentatricopeptide repeat-containing protein ...    74   1e-11

>ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 767

 Score =  103 bits (258), Expect = 1e-20
 Identities = 57/107 (53%), Positives = 72/107 (67%), Gaps = 4/107 (3%)
 Frame = -3

Query: 318 IEVPNVFNWNTMISGLADSVRMKKA-RLFDEMGARDCVTWNSMMSGYF*NGKSGDRL*MC 142
           I  PNV++WNTMISG ADS +M++A +LF++M  RD V+WNSMMSGYF NG+    +   
Sbjct: 55  IMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATI-KV 113

Query: 141 LFLMMWDFSCELDPFSLSCVLKACGS---VESGLQLHSLVRKFDFGI 10
              M+ D  C  DPFS SCV+KA GS   ++  LQLH    KFDFGI
Sbjct: 114 FVSMVRDCCCVPDPFSFSCVMKASGSLGYLKLALQLHGFAEKFDFGI 160


>ref|XP_002510717.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551418|gb|EEF52904.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 742

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 50/102 (49%), Positives = 72/102 (70%), Gaps = 4/102 (3%)
 Frame = -3

Query: 306 NVFNWNTMISGLADSVRMKKAR-LFDEMGARDCVTWNSMMSGYF*NGKSGDRL*MCLFLM 130
           NVF++NTMI+GL+ + ++ KA+ +FDEM  RD V+WNSMMSGYF NGK  + +     LM
Sbjct: 56  NVFSYNTMITGLSKAEQIDKAKKVFDEMPERDSVSWNSMMSGYFRNGKY-EEVVKVFVLM 114

Query: 129 MWDFSCELDPFSLSCVLKACGSV---ESGLQLHSLVRKFDFG 13
           + +F+C ++  S SC +KACG++   +  +QLH L  KFDFG
Sbjct: 115 IRNFTCIVNLLSFSCAMKACGALGCFKLAIQLHGLFEKFDFG 156


>emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 48/107 (44%), Positives = 61/107 (57%), Gaps = 4/107 (3%)
 Frame = -3

Query: 318 IEVPNVFNWNTMISGLADSVRMKKA-RLFDEMGARDCVTWNSMMSGYF*NGKSGDRL*MC 142
           I  PNV++WNTMISG ADS +M++A +LF++M  RD V+WNSMMSGYF NG+        
Sbjct: 65  IMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGE-------- 116

Query: 141 LFLMMWDFSCELDPFSLSCVLKACGS---VESGLQLHSLVRKFDFGI 10
                           L   +KA GS   ++  LQLH    KFDFGI
Sbjct: 117 ----------------LEATIKASGSLGYLKLALQLHGFAEKFDFGI 147


>ref|XP_003549322.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 921

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 46/107 (42%), Positives = 62/107 (57%), Gaps = 9/107 (8%)
 Frame = -3

Query: 306 NVFNWNTMISGLADSVRMKKA-RLFDEMG--ARDCVTWNSMMSGYF*NGKSGDRL*MCLF 136
           N+F WNTM+    DS RM++A  LFDEM    RD V+W +M+SGY  NG  G  +     
Sbjct: 69  NIFTWNTMLHAFFDSGRMREAENLFDEMPLIVRDSVSWTTMISGYCQNGLPGHSI-KTFM 127

Query: 135 LMMWDFSCEL---DPFSLSCVLKACGSVES---GLQLHSLVRKFDFG 13
            M+ D + ++   DPFS +C +KACG + S    LQLH+ V K   G
Sbjct: 128 SMLRDSNHDIQNCDPFSYTCTMKACGCLASTRLALQLHAHVIKLHLG 174


>ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355478813|gb|AES60016.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 960

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 50/114 (43%), Positives = 64/114 (56%), Gaps = 9/114 (7%)
 Frame = -3

Query: 324 EEIEVPNVFNWNTMISGLADSVRMKKA-RLFDEMGAR--DCVTWNSMMSGYF*NGKSGDR 154
           +E    N+F WNTMI  L  S RM  A +LFDEM  R  D V+W +M+SGY  NG    R
Sbjct: 67  QETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNG-FHSR 125

Query: 153 L*MCLFLMMWDFS---CELDPFSLSCVLKACGSV---ESGLQLHSLVRKFDFGI 10
                 LM+ D +      DPFS + V+KACGS+      +QLH+LV K  FG+
Sbjct: 126 SFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGM 179