BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037554
         (309 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containi...   150   8e-35
emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]   149   2e-34
ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containi...   144   1e-32
ref|XP_003608051.1| Pentatricopeptide repeat-containing protein ...   143   2e-32
ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containi...   130   1e-28

>ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
           gi|302143682|emb|CBI22543.3| unnamed protein product
           [Vitis vinifera]
          Length = 728

 Score =  150 bits (380), Expect = 8e-35
 Identities = 74/104 (71%), Positives = 87/104 (83%), Gaps = 1/104 (0%)
 Frame = -1

Query: 309 AKCGSISDAKTSFVNISSPNVAAWTSLINGYAHHSLGTEAILLFKKMSEQGVYPNAVTFV 130
           +KCGSI +A+TSFV+I SPNVAAWT+LING+A+H LG+EAI LF +M EQG+ PN  TFV
Sbjct: 473 SKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFV 532

Query: 129 GILLACSRAGLIMEGMKFFYSM-GYYRVVPTLEHYACVVDLLGR 1
           G+L ACSRAGL+ EGMK F+SM   Y V PTLEHYACVVDLLGR
Sbjct: 533 GVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGR 576


>emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  149 bits (377), Expect = 2e-34
 Identities = 74/104 (71%), Positives = 86/104 (82%), Gaps = 1/104 (0%)
 Frame = -1

Query: 309 AKCGSISDAKTSFVNISSPNVAAWTSLINGYAHHSLGTEAILLFKKMSEQGVYPNAVTFV 130
           +KCGSI +A+TSFV+I SPNVAAWT+LING+A+H LG+EAI LF  M EQG+ PN  TFV
Sbjct: 513 SKCGSIMEAQTSFVSIFSPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFV 572

Query: 129 GILLACSRAGLIMEGMKFFYSM-GYYRVVPTLEHYACVVDLLGR 1
           G+L ACSRAGL+ EGMK F+SM   Y V PTLEHYACVVDLLGR
Sbjct: 573 GVLSACSRAGLVNEGMKIFHSMERCYSVTPTLEHYACVVDLLGR 616


>ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 728

 Score =  144 bits (362), Expect = 1e-32
 Identities = 66/104 (63%), Positives = 85/104 (81%), Gaps = 1/104 (0%)
 Frame = -1

Query: 309 AKCGSISDAKTSFVNISSPNVAAWTSLINGYAHHSLGTEAILLFKKMSEQGVYPNAVTFV 130
           +KCG +++A+ SF++I SPNVAAWT+LINGYA+H LG+EAILLF+ M  QG+ PNA TFV
Sbjct: 483 SKCGHLAEAQRSFISIFSPNVAAWTALINGYAYHGLGSEAILLFRSMLHQGIVPNAATFV 542

Query: 129 GILLACSRAGLIMEGMKFFYSM-GYYRVVPTLEHYACVVDLLGR 1
           G+L AC+ AGL+ EG++ F+SM   Y V PT+EHY CVVDLLGR
Sbjct: 543 GVLSACNHAGLVCEGLRIFHSMQRCYGVTPTIEHYTCVVDLLGR 586


>ref|XP_003608051.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355509106|gb|AES90248.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 763

 Score =  143 bits (360), Expect = 2e-32
 Identities = 67/104 (64%), Positives = 83/104 (79%), Gaps = 1/104 (0%)
 Frame = -1

Query: 309 AKCGSISDAKTSFVNISSPNVAAWTSLINGYAHHSLGTEAILLFKKMSEQGVYPNAVTFV 130
           +KCG ++DA+ SF +I SPNVAAWT+LINGYA+H  G+EAI  F+ M +QGV PNA TFV
Sbjct: 479 SKCGHLADAQRSFTSIFSPNVAAWTALINGYAYHGCGSEAISRFRSMLDQGVVPNAATFV 538

Query: 129 GILLACSRAGLIMEGMKFFYSMGY-YRVVPTLEHYACVVDLLGR 1
            +L ACS AGL+ EG+KFF+SM   YR+ PT+EHY CVVDLLGR
Sbjct: 539 AVLSACSHAGLVDEGLKFFHSMQINYRITPTIEHYTCVVDLLGR 582


>ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  130 bits (326), Expect = 1e-28
 Identities = 65/104 (62%), Positives = 78/104 (75%), Gaps = 1/104 (0%)
 Frame = -1

Query: 309 AKCGSISDAKTSFVNISSPNVAAWTSLINGYAHHSLGTEAILLFKKMSEQGVYPNAVTFV 130
           AKCGSI DA+TSF ++  PNVAA+T+LINGY HH LG EA  +F +M +  V PN  T +
Sbjct: 478 AKCGSIYDAQTSFASVCLPNVAAFTALINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLL 537

Query: 129 GILLACSRAGLIMEGMKFFYSM-GYYRVVPTLEHYACVVDLLGR 1
           GIL ACS AG++ EGM  F+SM   Y V+PTLEHYACVVDLLGR
Sbjct: 538 GILSACSCAGMVKEGMTVFHSMEKCYGVIPTLEHYACVVDLLGR 581