BLASTX nr result
ID: Coptis24_contig00037540
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00037540
(312 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containi... 135 3e-30
emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera] 135 4e-30
ref|XP_002515835.1| pentatricopeptide repeat-containing protein,... 134 8e-30
ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containi... 131 5e-29
gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays] 130 1e-28
>ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 135 bits (340), Expect = 3e-30
Identities = 68/101 (67%), Positives = 80/101 (79%)
Frame = -1
Query: 306 EAKKAFDTMEDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYA 127
EA K F+ M+ KDVVSWNA+VT YSQ G F +A+ L E++ +++I LNVVTWSAVIAGYA
Sbjct: 284 EANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYA 343
Query: 126 QRGLGVEALDVFRKMQLSGSAPNAVTLVSLLSACAAVGAWL 4
QRGLG EALDVFR+M+L GS PN VTLVSLLS CA G L
Sbjct: 344 QRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLL 384
Score = 66.2 bits (160), Expect = 3e-09
Identities = 31/84 (36%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = -1
Query: 255 NALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYAQRGLGVEALDVFRKMQL 76
N LV++Y + G++ A ++ +EM ++ + ++V+W++++A Y Q G + A+ +F +M
Sbjct: 165 NGLVSMYGRCGAWENARQVFDEMRERGVG-DLVSWNSIVAAYMQGGDSIRAMKMFERMTE 223
Query: 75 S-GSAPNAVTLVSLLSACAAVGAW 7
G P+AV+LV++L ACA+VGAW
Sbjct: 224 DLGIRPDAVSLVNVLPACASVGAW 247
Score = 59.3 bits (142), Expect = 3e-07
Identities = 30/81 (37%), Positives = 47/81 (58%)
Frame = -1
Query: 255 NALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYAQRGLGVEALDVFRKMQL 76
N L+ +YS+SG A + + M+ + N V+W++++ GY G G EAL +F +MQ
Sbjct: 519 NCLIDMYSKSGDVDAARVVFDNMHQR----NGVSWTSLMTGYGMHGRGEEALQIFYEMQK 574
Query: 75 SGSAPNAVTLVSLLSACAAVG 13
G P+ VT V +L AC+ G
Sbjct: 575 VGLVPDGVTFVVVLYACSHSG 595
>emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 135 bits (339), Expect = 4e-30
Identities = 68/101 (67%), Positives = 80/101 (79%)
Frame = -1
Query: 306 EAKKAFDTMEDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYA 127
EA K F+ M+ KDVVSWNA+VT YSQ G F +A+ L E++ +++I LNVVTWSAVIAGYA
Sbjct: 303 EANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYA 362
Query: 126 QRGLGVEALDVFRKMQLSGSAPNAVTLVSLLSACAAVGAWL 4
QRGLG EALDVFR+M L GS PN VTLVSLLS CA+ G L
Sbjct: 363 QRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLL 403
Score = 66.2 bits (160), Expect = 3e-09
Identities = 31/84 (36%), Positives = 58/84 (69%), Gaps = 1/84 (1%)
Frame = -1
Query: 255 NALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYAQRGLGVEALDVFRKMQL 76
N LV++Y + G++ A ++ +EM ++ + ++V+W++++A Y Q G + A+ +F +M
Sbjct: 184 NGLVSMYGRCGAWENARQVFDEMRERGVG-DLVSWNSIVAAYMQGGDSIRAMKMFERMTE 242
Query: 75 S-GSAPNAVTLVSLLSACAAVGAW 7
G P+AV+LV++L ACA+VGAW
Sbjct: 243 DLGIRPDAVSLVNVLPACASVGAW 266
Score = 56.6 bits (135), Expect = 2e-06
Identities = 29/81 (35%), Positives = 46/81 (56%)
Frame = -1
Query: 255 NALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYAQRGLGVEALDVFRKMQL 76
N L+ +YS+SG A + + M+ + N V+W++++ GY G G EAL +F +MQ
Sbjct: 538 NCLIDMYSKSGDVDAARVVFDNMHQR----NGVSWTSLMTGYGMHGRGEEALQIFYEMQK 593
Query: 75 SGSAPNAVTLVSLLSACAAVG 13
P+ VT V +L AC+ G
Sbjct: 594 VXLVPDGVTFVVVLYACSHSG 614
>ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544990|gb|EEF46504.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 655
Score = 134 bits (337), Expect = 8e-30
Identities = 67/100 (67%), Positives = 82/100 (82%)
Frame = -1
Query: 303 AKKAFDTMEDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYAQ 124
A K FD M+ KDVVSWNA+VT YSQ G F +A+ L E+M +++I+L+VV+WSAVIAGYAQ
Sbjct: 300 ANKVFDRMQHKDVVSWNAMVTGYSQIGKFEDALGLFEKMREEKIQLDVVSWSAVIAGYAQ 359
Query: 123 RGLGVEALDVFRKMQLSGSAPNAVTLVSLLSACAAVGAWL 4
RGLG EAL+VFR+MQ+ G PN VTLVSLLS CA+VGA L
Sbjct: 360 RGLGYEALNVFRQMQVCGLRPNEVTLVSLLSGCASVGALL 399
Score = 60.1 bits (144), Expect = 2e-07
Identities = 33/94 (35%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Frame = -1
Query: 276 DKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYAQRGLGVEALD 97
D +V NA+V +Y + G+ A ++ +E+ E+ ++V+W+++IA Y Q G ++
Sbjct: 171 DSNVFVCNAVVAMYGRCGASSYARQMFDELLMGEV-FDLVSWNSMIAVYLQSGDLKSGIE 229
Query: 96 VFRKMQLSGS---APNAVTLVSLLSACAAVGAWL 4
+FR+M G P+AV+LV++L ACA++G WL
Sbjct: 230 LFRRMWKVGEFDIVPDAVSLVNVLPACASMGDWL 263
>ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
gi|449479088|ref|XP_004155501.1| PREDICTED:
pentatricopeptide repeat-containing protein
At5g16860-like [Cucumis sativus]
Length = 855
Score = 131 bits (330), Expect = 5e-29
Identities = 65/103 (63%), Positives = 81/103 (78%)
Frame = -1
Query: 312 IGEAKKAFDTMEDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAG 133
+ EA K F+ ++ KDVVSWNA+VT YSQ GSF A+ L + M +++I+L+V+TWSAVIAG
Sbjct: 285 MNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAG 344
Query: 132 YAQRGLGVEALDVFRKMQLSGSAPNAVTLVSLLSACAAVGAWL 4
YAQ+G G EALDVFR+MQL G PN VTL SLLS CA+VGA L
Sbjct: 345 YAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALL 387
Score = 57.4 bits (137), Expect = 1e-06
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Frame = -1
Query: 279 EDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYAQRGLGVEAL 100
++ D++ N L+ +Y++ S+ A + + + K+ NVVTW+ +I GYAQ G +AL
Sbjct: 408 KEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKD--KNVVTWTVMIGGYAQHGEANDAL 465
Query: 99 DVFRKM--QLSGSAPNAVTLVSLLSACAAVG 13
+F ++ Q + PNA TL L ACA +G
Sbjct: 466 KLFAQIFKQKTSLKPNAFTLSCALMACARLG 496
Score = 56.2 bits (134), Expect = 3e-06
Identities = 29/81 (35%), Positives = 47/81 (58%)
Frame = -1
Query: 255 NALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYAQRGLGVEALDVFRKMQL 76
N L+ +YS+SG A + + M + NVV+W++++ GY G G EAL +F +MQ
Sbjct: 522 NCLIDMYSKSGDIDAARAVFDNMKLR----NVVSWTSLMTGYGMHGRGEEALHLFDQMQK 577
Query: 75 SGSAPNAVTLVSLLSACAAVG 13
G A + +T + +L AC+ G
Sbjct: 578 LGFAVDGITFLVVLYACSHSG 598
>gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 130 bits (326), Expect = 1e-28
Identities = 64/104 (61%), Positives = 81/104 (77%)
Frame = -1
Query: 312 IGEAKKAFDTMEDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAG 133
+ +A K F+ ME KDVVSWNA+VT Y+QSG+FG A +L E M + I L+V+TWSAVIAG
Sbjct: 310 MNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAG 369
Query: 132 YAQRGLGVEALDVFRKMQLSGSAPNAVTLVSLLSACAAVGAWLQ 1
YAQRG EALD F++M L GS PN+VT++SLLSACA++GA Q
Sbjct: 370 YAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQ 413
Score = 61.2 bits (147), Expect = 8e-08
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Frame = -1
Query: 279 EDKDVVSWNALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYAQRGLGVEAL 100
+ +D++ +NAL+ +YS+ SF A + + + +E NVVTW+ +I GYAQ G +AL
Sbjct: 438 DGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRE--RNVVTWTVMIGGYAQYGDSNDAL 495
Query: 99 DVFRKM--QLSGSAPNAVTLVSLLSACAAVGA 10
+F +M + APNA T+ +L ACA + A
Sbjct: 496 KIFSEMISKPYAVAPNAYTISCILMACAHLAA 527
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/81 (35%), Positives = 48/81 (59%)
Frame = -1
Query: 255 NALVTVYSQSGSFGEAMKLIEEMNDKEIRLNVVTWSAVIAGYAQRGLGVEALDVFRKMQL 76
N L+ +YS+ G A + + M + N V+W+++++GY G G EALD+F KMQ
Sbjct: 553 NCLIDMYSKCGDVDTARNVFDSMPKR----NEVSWTSMMSGYGMHGRGKEALDIFDKMQK 608
Query: 75 SGSAPNAVTLVSLLSACAAVG 13
+G P+ ++ + LL AC+ G
Sbjct: 609 AGFVPDDISFLVLLYACSHSG 629