BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037509
         (288 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003602717.1| Pentatricopeptide repeat-containing protein ...   140   1e-31
ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31
emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]   139   2e-31
ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containi...   136   2e-30
ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containi...   136   2e-30

>ref|XP_003602717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491765|gb|AES72968.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 554

 Score =  140 bits (353), Expect = 1e-31
 Identities = 68/95 (71%), Positives = 80/95 (84%)
 Frame = +2

Query: 2   FIYRNGLDVTVSLGTSLINMYSRCGSIDEAVLVFYGMPKRNVITWTALINGLAVHGRSRE 181
           FI R G+ +TV LGT+LINMYSRCG ID +V VF  MP+RNV+TWTALINGLAVHGRSRE
Sbjct: 207 FIVRMGIVMTVPLGTALINMYSRCGLIDRSVKVFDEMPERNVVTWTALINGLAVHGRSRE 266

Query: 182 SLRLFYEMGKSGLRPDYTTLTGVLVACSHGGLVEE 286
           +L++FYEM +SGL+PD     GVLVACSHGGLVE+
Sbjct: 267 ALKVFYEMKESGLKPDGALFIGVLVACSHGGLVED 301


>ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  139 bits (351), Expect = 2e-31
 Identities = 66/95 (69%), Positives = 80/95 (84%)
 Frame = +2

Query: 2   FIYRNGLDVTVSLGTSLINMYSRCGSIDEAVLVFYGMPKRNVITWTALINGLAVHGRSRE 181
           FI RNGL+ TVSLGT+L++M+SRCG I+E++ VF  M +RNV+TWTALINGLAVHGRS E
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAE 270

Query: 182 SLRLFYEMGKSGLRPDYTTLTGVLVACSHGGLVEE 286
           +LR+FYEM   G +PD+ T TGVLVACSHGGLV E
Sbjct: 271 ALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSE 305



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
 Frame = +2

Query: 5   IYRNGLDVTVSLGTSLINMYSRCGSIDEAVLVFYGMPKRNVITWTALINGLAVHGRSRES 184
           +++ G D  V +   LI+ Y  CG +D A+ VF  MP+R++++W+++I   A +G   E+
Sbjct: 110 LFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEA 169

Query: 185 LRLFYEMGKSG-LRPDYTTLTGVLVACSHGGLVE 283
           L LF  M   G ++PD   +  V+ A S  G +E
Sbjct: 170 LALFQRMQLVGTVKPDEVIVLSVVSAISILGDLE 203


>emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  139 bits (351), Expect = 2e-31
 Identities = 66/95 (69%), Positives = 80/95 (84%)
 Frame = +2

Query: 2   FIYRNGLDVTVSLGTSLINMYSRCGSIDEAVLVFYGMPKRNVITWTALINGLAVHGRSRE 181
           FI RNGL+ TVSLGT+L++M+SRCG I+E++ VF  M +RNV+TWTALINGLAVHGRS E
Sbjct: 211 FISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSAE 270

Query: 182 SLRLFYEMGKSGLRPDYTTLTGVLVACSHGGLVEE 286
           +LR+FYEM   G +PD+ T TGVLVACSHGGLV E
Sbjct: 271 ALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSE 305


>ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  136 bits (343), Expect = 2e-30
 Identities = 65/95 (68%), Positives = 81/95 (85%)
 Frame = +2

Query: 2   FIYRNGLDVTVSLGTSLINMYSRCGSIDEAVLVFYGMPKRNVITWTALINGLAVHGRSRE 181
           FI R GL V+V+LGT+LI+M+SRCGSIDE+++VF  M  RNV+TWTALINGL VHGRS E
Sbjct: 211 FIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTE 270

Query: 182 SLRLFYEMGKSGLRPDYTTLTGVLVACSHGGLVEE 286
           +L +F+ M KSG++PDY T +GVLVACSHGGLV+E
Sbjct: 271 ALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKE 305



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
 Frame = +2

Query: 5   IYRNGLDVTVSLGTSLINMYSRCGSIDEAVLVFYGMPKRNVITWTALINGLAVHGRSRES 184
           I + GLD  + +  +LI +Y  CGS++ AV VF  M +R+ ++W+ +I     +G + E+
Sbjct: 110 IVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEA 169

Query: 185 LRLFYEMG-KSGLRPDYTTLTGVLVACSHGGLVE 283
           L LF +M  +  + PD  T+  V+ A SH G +E
Sbjct: 170 LDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLE 203


>ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  136 bits (342), Expect = 2e-30
 Identities = 66/95 (69%), Positives = 78/95 (82%)
 Frame = +2

Query: 2   FIYRNGLDVTVSLGTSLINMYSRCGSIDEAVLVFYGMPKRNVITWTALINGLAVHGRSRE 181
           FI R G+++TVSLG++LI+MYSRCG ID +V VF  MP RNV+TWTALINGLAVHGR RE
Sbjct: 221 FISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRNVVTWTALINGLAVHGRGRE 280

Query: 182 SLRLFYEMGKSGLRPDYTTLTGVLVACSHGGLVEE 286
           +L  FY+M +SGL+PD     GVLVACSHGGLVEE
Sbjct: 281 ALEAFYDMVESGLKPDRIAFMGVLVACSHGGLVEE 315