BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037506
         (329 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI19158.3| unnamed protein product [Vitis vinifera]               69   4e-10
ref|NP_173645.3| synaptonemal complex protein 1 [Arabidopsis tha...    67   2e-09
ref|XP_002302294.1| predicted protein [Populus trichocarpa] gi|2...    65   6e-09
ref|XP_003543761.1| PREDICTED: synaptonemal complex protein 1-li...    63   3e-08
ref|XP_003634472.1| PREDICTED: synaptonemal complex protein 2-li...    62   6e-08

>emb|CBI19158.3| unnamed protein product [Vitis vinifera]
          Length = 876

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 44/109 (40%), Positives = 50/109 (45%)
 Frame = +2

Query: 2   RALRCQHXXXXXXXXXXXXXXXXXXXRQRALLQLQWKVMDGNPPEDQEVNXXXXXXXXXX 181
           + LR QH                   RQRALLQLQWKVM     ED EVN          
Sbjct: 675 KVLRHQHEDECKKLQEELDRQKSREDRQRALLQLQWKVMSDKTQEDPEVNSKKDYSISSI 734

Query: 182 XXRDSDGKNRNQSTVIRSDKEGKMTNKTLESSPLLRATQTPVSNLLKKV 328
             RDS  + R+Q  ++R +   K        SP   ATQTPVSNLLKKV
Sbjct: 735 KMRDSSNRKRSQCALVRVENREK-------DSPFPGATQTPVSNLLKKV 776


>ref|NP_173645.3| synaptonemal complex protein 1 [Arabidopsis thaliana]
           gi|47606316|sp|Q9LME2.1|SYCP1_ARATH RecName:
           Full=Synaptonemal complex protein 1; AltName:
           Full=Synaptonemal complex central region protein ZYP1a
           gi|9392688|gb|AAF87265.1|AC068562_12 T16E15.12
           [Arabidopsis thaliana] gi|66394506|gb|AAY46119.1|
           synaptonemal complex central region protein ZYP1a
           [Arabidopsis thaliana] gi|332192096|gb|AEE30217.1|
           synaptonemal complex protein 1 [Arabidopsis thaliana]
          Length = 871

 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
 Frame = +2

Query: 2   RALRCQHXXXXXXXXXXXXXXXXXXXRQRALLQLQWKVMDGNPPEDQEVNXXXXXXXXXX 181
           +A +CQ+                   RQRAL+QLQWKVM  NPPE+QEVN          
Sbjct: 671 KAFKCQYEDDCKKLQEELDLQRKKEERQRALVQLQWKVMSDNPPEEQEVN----SNKNYS 726

Query: 182 XXRDS--DGKNRNQSTVIRSDKEGKMTNKTLESSPLLRATQTPVSNLLKK 325
             +DS   G  R++   +RSD      N  ++ SP ++A +TPVS +LKK
Sbjct: 727 ISKDSRLGGSKRSEHIRVRSD------NDNVQDSPFVKAKETPVSKILKK 770


>ref|XP_002302294.1| predicted protein [Populus trichocarpa] gi|222844020|gb|EEE81567.1|
           predicted protein [Populus trichocarpa]
          Length = 874

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 42/109 (38%), Positives = 52/109 (47%)
 Frame = +2

Query: 2   RALRCQHXXXXXXXXXXXXXXXXXXXRQRALLQLQWKVMDGNPPEDQEVNXXXXXXXXXX 181
           +ALRCQH                   RQRALL LQWKVM   P ED EVN          
Sbjct: 671 KALRCQHEDECGKLQEELDLQKSKEDRQRALLHLQWKVMSDKPQEDPEVNSKKEYSVSSV 730

Query: 182 XXRDSDGKNRNQSTVIRSDKEGKMTNKTLESSPLLRATQTPVSNLLKKV 328
             R   G  R+ +++      G + N+  + S  L+ATQTPV+ LLKKV
Sbjct: 731 KMRGPGGAKRSHNSL------GSLQNEK-KDSLCLKATQTPVTKLLKKV 772


>ref|XP_003543761.1| PREDICTED: synaptonemal complex protein 1-like [Glycine max]
          Length = 866

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 42/109 (38%), Positives = 47/109 (43%)
 Frame = +2

Query: 2   RALRCQHXXXXXXXXXXXXXXXXXXXRQRALLQLQWKVMDGNPPEDQEVNXXXXXXXXXX 181
           +ALRC+                    RQRALLQLQWKVM   P EDQEVN          
Sbjct: 674 KALRCELEDECRKLEEELHLQKSKEDRQRALLQLQWKVMSDKPKEDQEVNSKQDYSISSI 733

Query: 182 XXRDSDGKNRNQSTVIRSDKEGKMTNKTLESSPLLRATQTPVSNLLKKV 328
             R S G  RNQ  +                SP + ATQTPV  LLKK+
Sbjct: 734 KRRSSFGGKRNQHDL---------------DSPYIDATQTPVPKLLKKM 767


>ref|XP_003634472.1| PREDICTED: synaptonemal complex protein 2-like [Vitis vinifera]
          Length = 868

 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 42/109 (38%), Positives = 46/109 (42%)
 Frame = +2

Query: 2   RALRCQHXXXXXXXXXXXXXXXXXXXRQRALLQLQWKVMDGNPPEDQEVNXXXXXXXXXX 181
           + LR QH                   RQRALLQLQWKVM     ED EVN          
Sbjct: 675 KVLRHQHEDECKKLQEELDRQKSREDRQRALLQLQWKVMSDKTQEDPEVNSKKDYSISSI 734

Query: 182 XXRDSDGKNRNQSTVIRSDKEGKMTNKTLESSPLLRATQTPVSNLLKKV 328
             RDS  + R+Q  +                SP   ATQTPVSNLLKKV
Sbjct: 735 KMRDSSNRKRSQCAL---------------DSPFPGATQTPVSNLLKKV 768