BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037492
         (401 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    75   7e-12
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    74   1e-11
gb|EEC74955.1| hypothetical protein OsI_10942 [Oryza sativa Indi...    69   3e-10
gb|AAB84340.1| putative non-LTR retroelement reverse transcripta...    69   5e-10
gb|ABA96203.1| retrotransposon protein, putative, unclassified, ...    68   7e-10

>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
            (fragment)
          Length = 1365

 Score = 74.7 bits (182), Expect = 7e-12
 Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
 Frame = +1

Query: 1    SDFIDPVLQSWNVDLLSMYWPPVYVERILLISIRIHPHEDSIFWAPNKHGIYTVKSAYA- 177
            S  IDP  ++WN+++L   +P   VE I+L    +   EDS  W  + +G+Y+VK+ Y  
Sbjct: 961  SQLIDPTSRNWNLNMLRDLFPWKDVE-IILKQRPLFFKEDSFCWLHSHNGLYSVKTGYEF 1019

Query: 178  ---KVMEYLQPEADLHAS---LYRKIWSLPVPYNMRFLLWQPVHGVIPTSDFLATKSFIV 339
               +V   L  EA +  S   L+ KIW+L     +R  LW+ +HG IP  D L T+    
Sbjct: 1020 LSKQVHHRLYQEAKVKPSVNSLFDKIWNLHTAPKIRIFLWKALHGAIPVEDRLRTRGIRS 1079

Query: 340  DPTCYLCAQASESQVHL 390
            D  C +C   +E+  H+
Sbjct: 1080 DDGCLMCDTENETINHI 1096


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 40/129 (31%), Positives = 67/129 (51%)
 Frame = +1

Query: 4    DFIDPVLQSWNVDLLSMYWPPVYVERILLISIRIHPHEDSIFWAPNKHGIYTVKSAYAKV 183
            D I   ++SWNV+ +  + P  Y ++I  I+I   P +DS+ W P K G YT K+ YA  
Sbjct: 898  DLICHDVKSWNVEAIRKHLPQ-YEDQIRKITINALPLQDSLVWLPVKSGEYTTKTGYALA 956

Query: 184  MEYLQPEADLHASLYRKIWSLPVPYNMRFLLWQPVHGVIPTSDFLATKSFIVDPTCYLCA 363
                 P + L  +  + IW +     ++  LW+ + G +P  + L+ ++   + TC  C 
Sbjct: 957  KLNSFPASQLDFNWQKNIWKIHTSPKVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRCG 1016

Query: 364  QASESQVHL 390
            Q +ES +HL
Sbjct: 1017 Q-TESSLHL 1024


>gb|EEC74955.1| hypothetical protein OsI_10942 [Oryza sativa Indica Group]
          Length = 961

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 10/139 (7%)
 Frame = +1

Query: 1    SDFIDPVLQSWNVDLL-SMYWPPVYVERILLISIRIHPHEDSIFWAPNKHGIYTVKSAYA 177
            SD + P  Q WN +L+ +M++PP   E IL I +   P ED + W  +K GI+TV+SAY 
Sbjct: 701  SDLLLPDRQQWNEELVRNMFYPPD-AEGILRIQLPHSPGEDIVAWHYDKSGIFTVRSAYK 759

Query: 178  KVMEYLQPEADLHAS---------LYRKIWSLPVPYNMRFLLWQPVHGVIPTSDFLATKS 330
              ++ L    +   S         L++ IW+  VP  +R   W+     + T      ++
Sbjct: 760  VALDALLRSDNTGESSSAPNGERTLWKNIWNTQVPQKVRIFAWRLARDCLATQAKKKRRN 819

Query: 331  FIVDPTCYLCAQASESQVH 387
             +  P C +C +  E   H
Sbjct: 820  IVKSPVCEICGKCEEDGFH 838


>gb|AAB84340.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1094

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
 Frame = +1

Query: 1    SDFIDPVLQSWNVDLLSMYWPPVYVERILLISIRIHPHEDSIFWAPNKHGIYTVKSAY-- 174
            S  IDP  ++WN+++L   +P   ++ I+     +   +DS  W    HG+YTVKS Y  
Sbjct: 691  SQLIDPFSRNWNLNMLRDLFPWKEIQ-IICQQRPMASRQDSFCWFGTNHGLYTVKSEYDL 749

Query: 175  --AKVMEYLQPEADLHASL---YRKIWSLPVPYNMRFLLWQPVHGVIPTSDFLATKSFIV 339
               +V + +  EA+   SL   + KIW+L     ++  LW+ + G +   D L T+  ++
Sbjct: 750  CSRQVHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKVFLWKVLKGAVAVEDRLRTRGVLI 809

Query: 340  DPTCYLCAQASESQVHL 390
            +  C +C + +E+  H+
Sbjct: 810  EDGCSMCPEKNETLNHI 826


>gb|ABA96203.1| retrotransposon protein, putative, unclassified, expressed [Oryza
           sativa Japonica Group]
          Length = 1378

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
 Frame = +1

Query: 4   DFIDPVLQSWNVDLLSMYWPPVYVERILLISIRIHPHEDSIFWAPNKHGIYTVKSAYAKV 183
           + IDP+  +W  DLL   + P+ V RI+ I IR    +D + W  N+ G ++VKSAY   
Sbjct: 426 ELIDPINFTWGGDLLKTIFWPIDVCRIMQIPIRA-GRDDLVAWQYNRSGTFSVKSAYHCQ 484

Query: 184 MEY--------LQPEADLHASLYRKIWSLPVPYNMRFLLWQPVHGVIPTSDFLATKSFIV 339
            +Y        +Q      + L++++W+L VP  ++   W+ + G++P    LA +    
Sbjct: 485 WDYKFGERSAQMQASTASRSRLWKRLWNLKVPAKIKIFGWRALKGLVPCRAILANRHVGD 544

Query: 340 DPTCYLCAQASESQVHL 390
              C +C    E   H+
Sbjct: 545 SGGCPVCQNGPEDIKHM 561