BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037364
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAC87848.1| thylakoid structural protein [Coptis laciniata]       254   7e-66
gb|AEH26731.1| photosystem II cp47 protein [Nemesia fruticans]        251   4e-65
gb|AEX01362.1| photosystem II CP47 protein [Groenlandia densa]        251   4e-65
gb|AEX01330.1| photosystem II CP47 protein [Alisma triviale]          251   4e-65
ref|YP_007375069.1| hypothetical protein [Quercus rubra] gi|1576...   251   4e-65

>emb|CAC87848.1| thylakoid structural protein [Coptis laciniata]
          Length = 451

 Score =  254 bits (648), Expect = 7e-66
 Identities = 117/117 (100%), Positives = 117/117 (100%)
 Frame = +1

Query: 1   AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGAITNPGIWSY 180
           AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGAITNPGIWSY
Sbjct: 24  AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGAITNPGIWSY 83

Query: 181 EGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC 351
           EGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC
Sbjct: 84  EGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC 140


>gb|AEH26731.1| photosystem II cp47 protein [Nemesia fruticans]
          Length = 503

 Score =  251 bits (641), Expect = 4e-65
 Identities = 114/117 (97%), Positives = 116/117 (99%)
 Frame = +1

Query: 1   AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGAITNPGIWSY 180
           AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGG +TNPGIWSY
Sbjct: 29  AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTVTNPGIWSY 88

Query: 181 EGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC 351
           EGVAGAHI+FSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC
Sbjct: 89  EGVAGAHIMFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC 145


>gb|AEX01362.1| photosystem II CP47 protein [Groenlandia densa]
          Length = 498

 Score =  251 bits (641), Expect = 4e-65
 Identities = 115/117 (98%), Positives = 116/117 (99%)
 Frame = +1

Query: 1   AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGAITNPGIWSY 180
           AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGG ITNPGIWSY
Sbjct: 24  AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSY 83

Query: 181 EGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC 351
           EGVAGAHI+FSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC
Sbjct: 84  EGVAGAHIVFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC 140


>gb|AEX01330.1| photosystem II CP47 protein [Alisma triviale]
          Length = 498

 Score =  251 bits (641), Expect = 4e-65
 Identities = 115/117 (98%), Positives = 116/117 (99%)
 Frame = +1

Query: 1   AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGAITNPGIWSY 180
           AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGG ITNPGIWSY
Sbjct: 24  AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSY 83

Query: 181 EGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC 351
           EGVAGAHI+FSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC
Sbjct: 84  EGVAGAHIVFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC 140


>ref|YP_007375069.1| hypothetical protein [Quercus rubra] gi|157689923|gb|ABV65618.1|
           photosystem II CP47 chlorophyll apoprotein (chloroplast)
           [Quercus nigra] gi|441421948|gb|AGC31272.1| hypothetical
           protein [Quercus rubra]
          Length = 508

 Score =  251 bits (641), Expect = 4e-65
 Identities = 115/117 (98%), Positives = 116/117 (99%)
 Frame = +1

Query: 1   AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGAITNPGIWSY 180
           AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGG ITNPGIWSY
Sbjct: 34  AGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWSITGGTITNPGIWSY 93

Query: 181 EGVAGAHILFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC 351
           EGVAGAHI+FSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC
Sbjct: 94  EGVAGAHIVFSGLCFLAAIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLAC 150