BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037217
         (400 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding pr...    85   7e-15
ref|XP_002519416.1| polyadenylate-binding protein, putative [Ric...    78   9e-13
ref|XP_003625734.1| Polyadenylate binding protein [Medicago trun...    62   4e-08
ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding pr...    61   1e-07
emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]    61   1e-07

>ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
           vinifera] gi|297740018|emb|CBI30200.3| unnamed protein
           product [Vitis vinifera]
          Length = 634

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 56/132 (42%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
 Frame = +2

Query: 8   VSSTRPAFQPLPHSAIPXXXXXXXXXXGRMNGHLMPHGGIHSAPFVAQWQQPAQTANSPK 187
           +  TRPAFQP     +P          GR NGH+ P GG HS  F+   QQP Q   SPK
Sbjct: 437 IPPTRPAFQPSSIPLMPNTPRQHRQNRGRTNGHI-PQGGGHSTAFMPHLQQPTQPVISPK 495

Query: 188 DSSNQQ-GGQAKDVANGHPREMXXXXXXXXXXXXXXXXXXXQEVEMXXXXXXXXXPQQQK 364
           DS NQQ  GQAK V NG   EM                   Q  EM         P+QQK
Sbjct: 496 DSINQQRAGQAKYVPNGRSYEM-SKGSGIPSAASNSVGTGSQGSEMLSSMLAAASPEQQK 554

Query: 365 NILGERLYPLVE 400
            ILGE LYPLV+
Sbjct: 555 QILGEHLYPLVQ 566


>ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
           gi|223541279|gb|EEF42830.1| polyadenylate-binding
           protein, putative [Ricinus communis]
          Length = 632

 Score = 77.8 bits (190), Expect = 9e-13
 Identities = 50/132 (37%), Positives = 61/132 (46%)
 Frame = +2

Query: 2   GFVSSTRPAFQPLPHSAIPXXXXXXXXXXGRMNGHLMPHGGIHSAPFVAQWQQPAQTANS 181
           GF   +RP FQP     +P           RMNGH++P GG  S  +V   QQPAQ   S
Sbjct: 435 GFAPPSRPVFQPSHLPVMPISQRQHKQGRVRMNGHVLPQGGTQSVSYV---QQPAQPLTS 491

Query: 182 PKDSSNQQGGQAKDVANGHPREMXXXXXXXXXXXXXXXXXXXQEVEMXXXXXXXXXPQQQ 361
            KD SNQ+ GQAK V NG   ++                   Q  E+         P +Q
Sbjct: 492 LKDPSNQRAGQAKYVPNGRTCDV-SKGSGVLSAAPNSTGPVSQGSEVLSSMLAAASPDEQ 550

Query: 362 KNILGERLYPLV 397
           K ILGE+LYPLV
Sbjct: 551 KQILGEQLYPLV 562


>ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
           gi|355500749|gb|AES81952.1| Polyadenylate binding
           protein [Medicago truncatula]
          Length = 613

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
 Frame = +2

Query: 89  GRMNGHLMPHGGIHSAPFVAQWQQPAQTANSPKDSSNQQ-GGQAKDVANGHPREMXXXXX 265
           GRMNGH +  G  HS  ++ Q QQ +Q+A S ++SS QQ  GQAK V +G  REM     
Sbjct: 464 GRMNGHAVSQGNTHSGTYMPQAQQASQSAISSRESSTQQRTGQAKYVPSGRHREMEKGSG 523

Query: 266 XXXXXXXXXXXXXXQEVEMXXXXXXXXXPQQQKNILGERLYPLVE 400
                            E+         P+QQK ILGE LY LV+
Sbjct: 524 LSSSGGSLGP-------EVLHSMLANATPEQQKEILGEHLYMLVQ 561


>ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
           [Cucumis sativus] gi|449521207|ref|XP_004167621.1|
           PREDICTED: probable polyadenylate-binding protein
           At2g36660-like [Cucumis sativus]
          Length = 640

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 44/135 (32%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
 Frame = +2

Query: 5   FVSSTRPAFQPLPHSAIPXXXXXXXXXXGRMNGHLMPH-GGIHSAPFVAQWQQPAQTANS 181
           + S  RP FQP P   IP          G+MNG ++ H  G+ S  ++   Q   Q+  +
Sbjct: 440 YTSPARPGFQPSPLPIIPTASRQPRQNRGKMNGPILSHQNGVQSVSYMQNSQDANQSVVT 499

Query: 182 PKDSSNQQ-GGQAKDVANGHPREM-XXXXXXXXXXXXXXXXXXXQEVEMXXXXXXXXXPQ 355
            K SSNQQ  GQ K V N    E                     Q  ++         P 
Sbjct: 500 AKSSSNQQWTGQVKYVPNARSCETNKTSGASAAAAAFNSVGDVSQGSQILSSMLASSPPD 559

Query: 356 QQKNILGERLYPLVE 400
           QQK ILGE LYPLV+
Sbjct: 560 QQKQILGEHLYPLVQ 574


>emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
          Length = 544

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/66 (48%), Positives = 36/66 (54%)
 Frame = +2

Query: 8   VSSTRPAFQPLPHSAIPXXXXXXXXXXGRMNGHLMPHGGIHSAPFVAQWQQPAQTANSPK 187
           +  TRPAFQP P   +P          GR NGH+ P GG HS  F+   QQP Q   SPK
Sbjct: 457 IPPTRPAFQPSPIPLMPNTPRQHRQNRGRTNGHI-PQGGGHSTAFMPHLQQPTQPVISPK 515

Query: 188 DSSNQQ 205
           DS NQQ
Sbjct: 516 DSINQQ 521