BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00037020
         (292 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510115.1| transcription initiation factor, putative [R...   100   1e-19
ref|XP_002302415.1| predicted protein [Populus trichocarpa] gi|2...   100   2e-19
ref|NP_001190458.1| TBP-associated factor 4 [Arabidopsis thalian...    98   6e-19
ref|XP_002863689.1| transcription initiation factor [Arabidopsis...    98   6e-19
ref|NP_199127.3| TBP-associated factor 4 [Arabidopsis thaliana] ...    98   6e-19

>ref|XP_002510115.1| transcription initiation factor, putative [Ricinus communis]
           gi|223550816|gb|EEF52302.1| transcription initiation
           factor, putative [Ricinus communis]
          Length = 925

 Score =  100 bits (250), Expect = 1e-19
 Identities = 53/98 (54%), Positives = 77/98 (78%), Gaps = 1/98 (1%)
 Frame = -2

Query: 291 SRISQEAQTVV-EEEERLILQRIPLQRKLAEIISKYGITHISNNVEQCLSMCVKERVLGM 115
           SR+S+ ++ VV EEEERLILQ+ PLQ+KLAEI+ K G+ +I+N+VE+CLS+CV+ER+ G+
Sbjct: 641 SRVSEASRRVVQEEEERLILQKTPLQKKLAEIMVKCGLKNINNDVERCLSLCVEERMRGL 700

Query: 114 ISDLTKLSKLRVDRGKAVQQTSMTSDAQLETLMMDCKA 1
           IS L +LSK RVD  K+  +T +TSD + + + M+ KA
Sbjct: 701 ISTLIRLSKQRVDAEKSRHRTVITSDVRQQIMTMNQKA 738


>ref|XP_002302415.1| predicted protein [Populus trichocarpa] gi|222844141|gb|EEE81688.1|
           predicted protein [Populus trichocarpa]
          Length = 379

 Score =  100 bits (248), Expect = 2e-19
 Identities = 53/98 (54%), Positives = 75/98 (76%), Gaps = 1/98 (1%)
 Frame = -2

Query: 291 SRISQEAQTVV-EEEERLILQRIPLQRKLAEIISKYGITHISNNVEQCLSMCVKERVLGM 115
           SR+S+ ++ VV EEEERLILQ+ PLQ+KL EI++K G+ +I N+V +CLS+CV+ER+ G+
Sbjct: 97  SRVSEASRRVVQEEEERLILQKKPLQKKLGEIMAKCGLKNIGNDVGRCLSLCVEERMRGL 156

Query: 114 ISDLTKLSKLRVDRGKAVQQTSMTSDAQLETLMMDCKA 1
           ISDL +LSK RVD  K   QT +TSD + + + M+ KA
Sbjct: 157 ISDLIRLSKQRVDAEKPRHQTLITSDVRQQIMTMNRKA 194


>ref|NP_001190458.1| TBP-associated factor 4 [Arabidopsis thaliana]
           gi|332007531|gb|AED94914.1| TBP-associated factor 4
           [Arabidopsis thaliana]
          Length = 852

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 52/96 (54%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
 Frame = -2

Query: 288 RISQEAQTVV-EEEERLILQRIPLQRKLAEIISKYGITHISNNVEQCLSMCVKERVLGMI 112
           R+S+ ++ VV EEEERLILQ+ PLQRKLAEI++K G+  ISN+VE+CLS+CV+ER+ G++
Sbjct: 564 RVSEASRRVVHEEEERLILQKNPLQRKLAEIMAKAGLKQISNDVERCLSLCVEERMRGLL 623

Query: 111 SDLTKLSKLRVDRGKAVQQTSMTSDAQLETLMMDCK 4
           S + +LSK RVD  K+  +T +TSD +L+   M+ K
Sbjct: 624 SHIIRLSKQRVDAEKSRHRTFITSDIRLQINEMNQK 659


>ref|XP_002863689.1| transcription initiation factor [Arabidopsis lyrata subsp. lyrata]
           gi|297309524|gb|EFH39948.1| transcription initiation
           factor [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 52/96 (54%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
 Frame = -2

Query: 288 RISQEAQTVV-EEEERLILQRIPLQRKLAEIISKYGITHISNNVEQCLSMCVKERVLGMI 112
           R+S+ ++ VV EEEERLILQ+ PLQRKLAEI++K G+  ISN+VE+CLS+CV+ER+ G++
Sbjct: 565 RVSEASRRVVHEEEERLILQKNPLQRKLAEIMAKAGLKQISNDVERCLSLCVEERMRGLL 624

Query: 111 SDLTKLSKLRVDRGKAVQQTSMTSDAQLETLMMDCK 4
           S + +LSK RVD  K+  +T +TSD +L+   M+ K
Sbjct: 625 SHIIRLSKQRVDAEKSRHRTFITSDIRLQINEMNQK 660


>ref|NP_199127.3| TBP-associated factor 4 [Arabidopsis thaliana]
           gi|38490053|gb|AAR21620.1| TATA-binding protein
           associated factor 4b [Arabidopsis thaliana]
           gi|110738778|dbj|BAF01312.1| hypothetical protein
           [Arabidopsis thaliana] gi|332007530|gb|AED94913.1|
           TBP-associated factor 4 [Arabidopsis thaliana]
          Length = 823

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 52/96 (54%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
 Frame = -2

Query: 288 RISQEAQTVV-EEEERLILQRIPLQRKLAEIISKYGITHISNNVEQCLSMCVKERVLGMI 112
           R+S+ ++ VV EEEERLILQ+ PLQRKLAEI++K G+  ISN+VE+CLS+CV+ER+ G++
Sbjct: 564 RVSEASRRVVHEEEERLILQKNPLQRKLAEIMAKAGLKQISNDVERCLSLCVEERMRGLL 623

Query: 111 SDLTKLSKLRVDRGKAVQQTSMTSDAQLETLMMDCK 4
           S + +LSK RVD  K+  +T +TSD +L+   M+ K
Sbjct: 624 SHIIRLSKQRVDAEKSRHRTFITSDIRLQINEMNQK 659