BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036900
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAF64713.1| 70 kDa subunit of replication protein A [Ipomoea...    57   2e-06
dbj|BAB11360.1| replication protein A1-like protein [Arabidopsis...    57   2e-06
ref|XP_002876822.1| hypothetical protein ARALYDRAFT_322576 [Arab...    56   3e-06

>dbj|BAF64713.1| 70 kDa subunit of replication protein A [Ipomoea nil]
          Length = 604

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 27/82 (32%), Positives = 46/82 (56%)
 Frame = +3

Query: 27  WCDGCHTFVTDVKPRYMIRIQVEDSTHSISLVVFDKLAEKLILDPVEKLVDMEKQDNGSE 206
           WC+GC    TD   RY++ ++V D++    L VF++ AEK+I    ++L  +  QD  S 
Sbjct: 484 WCEGCQKNDTDCSLRYIVAMRVSDTSGEAWLSVFNEQAEKIIGCSADELDRLRSQDGDSS 543

Query: 207 LIKEELKKLIGVSFTFEIKITP 272
             + +LK+   V + F + +TP
Sbjct: 544 AYQMKLKEATWVPYLFRVSVTP 565


>dbj|BAB11360.1| replication protein A1-like protein [Arabidopsis thaliana]
          Length = 543

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
 Frame = +3

Query: 27  WCDGCHTFVTDVKPRYMIRIQVEDSTHSISLVVFDKLAEKLILDPVEKLVDMEKQD-NGS 203
           WCD C   +T+V+ RY + ++V D T  I L+VF+  A KLI    E+LVD + ++    
Sbjct: 312 WCDKCQESITNVEARYKLHVRVMDQTAEIKLMVFENNATKLIGKSSEELVDGQYEEIKDP 371

Query: 204 ELIKEELKKLIGVSFTFEIKITPFNL 281
            +I + +  L G +F F + +   N+
Sbjct: 372 TIISDVITNLCGKTFHFLVSVEKANI 397


>ref|XP_002876822.1| hypothetical protein ARALYDRAFT_322576 [Arabidopsis lyrata subsp.
           lyrata] gi|297322660|gb|EFH53081.1| hypothetical protein
           ARALYDRAFT_322576 [Arabidopsis lyrata subsp. lyrata]
          Length = 519

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
 Frame = +3

Query: 30  CDGCHTFVTDVKPRYMIRIQVEDSTHSISLVVFDKLAEKLILDPVEKLVDMEKQDNGSEL 209
           C+ C TFVT    RY ++  V D T S S ++FD+   KLI     +L++ + Q N S+ 
Sbjct: 312 CEKCDTFVTTTSTRYKVQATVIDHTGSASFLLFDQDVIKLIHKSAYELLEQQVQFNRSDQ 371

Query: 210 IKEELKKLIGVSFTFEIK---ITPFNLKDKNKSF 302
           I +EL  L G+ F F+I+    T FN +   + F
Sbjct: 372 IPQELLDLQGLQFVFKIQGSDSTKFNSQSTFRVF 405