BLASTX nr result
ID: Coptis24_contig00036843
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00036843
(339 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containi... 137 9e-31
ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containi... 130 1e-28
ref|XP_003592182.1| Pentatricopeptide repeat-containing protein ... 129 3e-28
ref|XP_002513633.1| pentatricopeptide repeat-containing protein,... 125 5e-27
ref|XP_002305943.1| predicted protein [Populus trichocarpa] gi|2... 120 9e-26
>ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic [Vitis vinifera]
gi|302143764|emb|CBI22625.3| unnamed protein product
[Vitis vinifera]
Length = 880
Score = 137 bits (345), Expect = 9e-31
Identities = 67/112 (59%), Positives = 86/112 (76%)
Frame = -1
Query: 336 KMEFSGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCS 157
+ME SG+ PN FT+ +L+ CSS+ L LG+QIHSRV+ AGLE D+SVG+ LVDMYMKCS
Sbjct: 307 EMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCS 366
Query: 156 EMVKDASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
M++DA AF+ I SPNVI WTSLI+GF++HGLE E+ + F MQ G +PN
Sbjct: 367 NMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPN 418
Score = 73.6 bits (179), Expect = 2e-11
Identities = 43/112 (38%), Positives = 66/112 (58%)
Frame = -1
Query: 336 KMEFSGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCS 157
+M +G++PN FTF +LL SS L G+ +H+ ++ +E +L + + LVDMY KC
Sbjct: 207 RMIQTGVAPNEFTFVKLLA-ASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKC- 264
Query: 156 EMVKDASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
+ ++DA K + +V WT++ISGF Q EA AF EM+ +G PN
Sbjct: 265 QSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPN 316
Score = 70.5 bits (171), Expect = 1e-10
Identities = 35/111 (31%), Positives = 61/111 (54%)
Frame = -1
Query: 333 MEFSGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCSE 154
M + + F+ L + + ++ G+Q+H +++GL +SV +GLVD+Y KC
Sbjct: 511 MNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCG- 569
Query: 153 MVKDASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
+ DA +F +I P+ + W LI G A +G A AF +M++AG +P+
Sbjct: 570 CIHDAHRSFLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPD 620
Score = 66.2 bits (160), Expect = 3e-09
Identities = 34/111 (30%), Positives = 58/111 (52%)
Frame = -1
Query: 333 MEFSGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCSE 154
M SG PN FT L +CS+L + G + + V ++G + + +GS L+D Y KC
Sbjct: 107 MLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCG- 165
Query: 153 MVKDASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
++A F+ + + +++ WT ++S F + G +A Q + M G PN
Sbjct: 166 CTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPN 216
>ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
chloroplastic-like [Glycine max]
Length = 903
Score = 130 bits (326), Expect = 1e-28
Identities = 66/111 (59%), Positives = 77/111 (69%)
Frame = -1
Query: 333 MEFSGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCSE 154
ME SGI PN FT+ LL+ SS+ L+LG Q HSRVI GLE D+ VG+ LVDMYMKCS
Sbjct: 311 MELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVGLEGDIYVGNALVDMYMKCSH 370
Query: 153 MVKDASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
+ AF+ I PNVI WTSLI+GFA+HG E E+ Q F EMQ AG QPN
Sbjct: 371 TTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGVQPN 421
Score = 73.9 bits (180), Expect = 1e-11
Identities = 41/109 (37%), Positives = 63/109 (57%), Gaps = 1/109 (0%)
Frame = -1
Query: 324 SGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCSEMVK 145
SG PN FT L +CS+L + + G +IH+ V++ GLE + +G+ LVD+Y KC V+
Sbjct: 111 SGQCPNEFTLSSALRSCSALGEFEFGAKIHASVVKLGLELNHVLGTTLVDLYTKCDCTVE 170
Query: 144 DAS-LAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
LAF + +V+ WT++IS + EA Q +++M AG PN
Sbjct: 171 PHKLLAF--VKDGDVVSWTTMISSLVETSKWSEALQLYVKMIEAGIYPN 217
Score = 72.4 bits (176), Expect = 4e-11
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Frame = -1
Query: 336 KMEFSGISPNAFTFGRLLHNCSSLS-DLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKC 160
KM +GI PN FTF +LL S L G+ +HS++I G+E +L + + ++ MY KC
Sbjct: 208 KMIEAGIYPNEFTFVKLLGMPSFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKC 267
Query: 159 SEMVKDASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
M +DA +Q +V WTS+ISGF Q+ EA A ++M+++G PN
Sbjct: 268 RRM-EDAIKVSQQTPKYDVCLWTSIISGFVQNSQVREAVNALVDMELSGILPN 319
Score = 70.5 bits (171), Expect = 1e-10
Identities = 36/106 (33%), Positives = 58/106 (54%)
Frame = -1
Query: 318 ISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCSEMVKDA 139
+ + F+ + + L ++ G+Q+H ++G E SV + LV Y KC M +DA
Sbjct: 519 VKMDEFSLASFISAAAGLGIMETGKQLHCYSFKSGFERCNSVSNSLVHSYSKCGSM-RDA 577
Query: 138 SLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
FK I P+ + W LISG A +GL +A AF +M++AG +P+
Sbjct: 578 YRVFKDITEPDRVSWNGLISGLASNGLISDALSAFDDMRLAGVKPD 623
>ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481230|gb|AES62433.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 912
Score = 129 bits (323), Expect = 3e-28
Identities = 65/113 (57%), Positives = 81/113 (71%)
Frame = -1
Query: 339 RKMEFSGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKC 160
R ME SG+ PN FT+ LL+ SS+ L LG Q HSRVI GLE DL +G+ LVDMYMKC
Sbjct: 308 RDMELSGLLPNNFTYSSLLNASSSILSLDLGEQFHSRVIIVGLEDDLYIGNALVDMYMKC 367
Query: 159 SEMVKDASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
S + +A F++I SPNV+CWTSLI+GFA+ LE ++FQ F EMQ AG +PN
Sbjct: 368 SHITTNAVKVFREITSPNVMCWTSLIAGFAEKRLE-DSFQLFAEMQAAGVRPN 419
Score = 77.8 bits (190), Expect = 8e-13
Identities = 46/112 (41%), Positives = 63/112 (56%)
Frame = -1
Query: 336 KMEFSGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCS 157
KM SG+ PN FTF +LL SS L G+ +H+ +I G E +L + + +VDMY KC
Sbjct: 208 KMIESGVYPNEFTFVKLLGAVSSFLGLSYGKLLHAHLIMFGAELNLVLKTAVVDMYSKCR 267
Query: 156 EMVKDASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
MV DA +V WT+LISGF Q+ EA F +M+++G PN
Sbjct: 268 RMV-DAIKVSNLTPEYDVYLWTTLISGFTQNLQVREAISVFRDMELSGLLPN 318
Score = 74.3 bits (181), Expect = 9e-12
Identities = 37/107 (34%), Positives = 60/107 (56%)
Frame = -1
Query: 321 GISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCSEMVKD 142
GI + F+ L + L ++ G+Q+H +++G + SV + LV +Y KC + D
Sbjct: 516 GIKMDEFSLASFLSAAAGLGTMETGKQLHCYSVKSGFQRCHSVSNSLVHLYSKCGS-IHD 574
Query: 141 ASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
A+ AFK I P+ W LISGF+ +GL A F +M++AG +P+
Sbjct: 575 ANRAFKDISEPDAFSWNGLISGFSWNGLISHALSTFDDMRLAGVKPD 621
Score = 69.3 bits (168), Expect = 3e-10
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 10/118 (8%)
Frame = -1
Query: 324 SGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCS---- 157
SG PN FT L +C +L + + G QIH ++ GLE + VG+ LV+ Y KC
Sbjct: 109 SGEYPNEFTLSSALRSCFALGEFERGMQIHCSAVKLGLEMNRFVGTSLVEFYTKCGCCSV 168
Query: 156 ------EMVKDASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
+VKD +V+ WT+++S ++G EAF+ +++M +G PN
Sbjct: 169 EAWKLLSLVKDGG---------DVVSWTTMLSSLVENGKWGEAFEIYVKMIESGVYPN 217
>ref|XP_002513633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223547541|gb|EEF49036.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 777
Score = 125 bits (313), Expect = 5e-27
Identities = 62/112 (55%), Positives = 79/112 (70%)
Frame = -1
Query: 336 KMEFSGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCS 157
KME SG+S + FT+ +L C S+ L LGRQIHSRVI GLE D+ VG+ LVDMYMKCS
Sbjct: 311 KMEISGVSASNFTYLSMLSVCISILSLDLGRQIHSRVIRTGLEDDVPVGNALVDMYMKCS 370
Query: 156 EMVKDASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
+V+ F+ I SPNVI WTSLI+GFA+HG + ++ F+EM+ G QPN
Sbjct: 371 CIVEHGLRMFRGIKSPNVISWTSLIAGFAEHGFQQDSLNLFMEMRTVGVQPN 422
Score = 70.9 bits (172), Expect = 1e-10
Identities = 38/111 (34%), Positives = 61/111 (54%)
Frame = -1
Query: 333 MEFSGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCSE 154
M SG PNAFTF +L +C +L D G++IH+ I+ G E + +GS L+D+Y + +
Sbjct: 111 MVLSGPYPNAFTFSSILRSCFALGDFSYGKRIHASSIKHGFESNQILGSSLIDLYSR-FD 169
Query: 153 MVKDASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
+DA F + S + + WT++I+ Q G A + ++EM A N
Sbjct: 170 STEDACKLFSYMDSGDTVSWTTVIASCVQAGKCSHALRIYMEMLEAQVSSN 220
Score = 70.9 bits (172), Expect = 1e-10
Identities = 36/91 (39%), Positives = 57/91 (62%)
Frame = -1
Query: 273 SSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCSEMVKDASLAFKQIISPNVICW 94
+SL ++ G+Q+H +++GL LSV +GL+D+Y K +V +A AF +I P+V+ W
Sbjct: 535 ASLGRIETGKQLHCYSLKSGLSCCLSVANGLIDLYGKYG-LVHEARRAFTEITEPDVVSW 593
Query: 93 TSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
LISG A +G A AF +M++ G QP+
Sbjct: 594 NGLISGLASNGHISSALSAFDDMRLRGIQPD 624
Score = 67.4 bits (163), Expect = 1e-09
Identities = 42/102 (41%), Positives = 62/102 (60%)
Frame = -1
Query: 318 ISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCSEMVKDA 139
+S N FTF RLL SS LQ G+ IH+ I G++ +L + + LV+MY +C + ++DA
Sbjct: 217 VSSNEFTFVRLLA-ASSFIGLQYGKLIHAHAIVLGVKLNLVLKTALVNMYSRC-QRIEDA 274
Query: 138 SLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAG 13
K +VI WT++ISG AQ+ EA AF +M+I+G
Sbjct: 275 IKVSKLTPEYDVILWTAIISGLAQNMKFQEAVAAFHKMEISG 316
>ref|XP_002305943.1| predicted protein [Populus trichocarpa] gi|222848907|gb|EEE86454.1|
predicted protein [Populus trichocarpa]
Length = 693
Score = 120 bits (302), Expect = 9e-26
Identities = 60/113 (53%), Positives = 80/113 (70%)
Frame = -1
Query: 339 RKMEFSGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKC 160
++ME SGI N FT+ +L+ CS + L LGRQIH+RVI AGLE D+ VG+ LVDMYMKC
Sbjct: 231 QEMEASGILSNNFTYLSILNACSLILSLDLGRQIHARVIMAGLEDDIPVGNALVDMYMKC 290
Query: 159 SEMVKDASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
S V+D F+ I SP+VI WTSLI+G ++HG +F +++EM +G QPN
Sbjct: 291 SHEVEDGLRVFEGIESPDVISWTSLIAGLSEHGFHQGSFDSYMEMTASGLQPN 343
Score = 73.9 bits (180), Expect = 1e-11
Identities = 40/113 (35%), Positives = 65/113 (57%)
Frame = -1
Query: 339 RKMEFSGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKC 160
++M SG PN FTF +L CS+L + G+ IH VI+ G E + +GS L+D+Y K
Sbjct: 30 QEMMGSGPCPNEFTFSSVLRACSALGEFSDGKCIHGCVIKHGFESNQILGSVLIDLYSKY 89
Query: 159 SEMVKDASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
+++A F + + +V+ WT++IS Q G +A + +++M AG PN
Sbjct: 90 GS-IEEACRLFSCVENGDVVSWTTMISSLVQAGKWSQALRIYIDMIKAGVYPN 141
Score = 70.5 bits (171), Expect = 1e-10
Identities = 35/106 (33%), Positives = 60/106 (56%)
Frame = -1
Query: 318 ISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCSEMVKDA 139
I + ++ L + L+ ++ G Q+HS +++GL +SV +GLV Y KC + +DA
Sbjct: 441 IKMDGYSMAGFLSASAGLNSVETGMQLHSYSVKSGLGSSISVSNGLVSFYGKCG-LTRDA 499
Query: 138 SLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
AF +I P+++ W LIS A +G A AF +M++ G +P+
Sbjct: 500 ERAFAEIREPDIVSWNGLISVLASYGHISSALSAFDDMRLTGVKPD 545
Score = 62.0 bits (149), Expect = 5e-08
Identities = 40/108 (37%), Positives = 59/108 (54%)
Frame = -1
Query: 324 SGISPNAFTFGRLLHNCSSLSDLQLGRQIHSRVIEAGLEWDLSVGSGLVDMYMKCSEMVK 145
+G+ PN FTF ++L L L+ G+ +H+ +I G+E +L V + LV MY KC M
Sbjct: 136 AGVYPNEFTFVKVLAAAGFLG-LKHGKVVHAHLIVFGVELNLVVKTALVHMYSKCQRM-D 193
Query: 144 DASLAFKQIISPNVICWTSLISGFAQHGLECEAFQAFLEMQIAGTQPN 1
DA K + WT+++SG AQ+ EA AF EM+ +G N
Sbjct: 194 DAVRISKLTPESDRFLWTAILSGLAQNLKLREAVVAFQEMEASGILSN 241