BLASTX nr result
ID: Coptis24_contig00036841
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00036841
(536 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245... 239 2e-61
emb|CBI34885.3| unnamed protein product [Vitis vinifera] 239 2e-61
emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera] 239 2e-61
ref|XP_002524665.1| pentatricopeptide repeat-containing protein,... 225 3e-57
gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea m... 191 8e-47
>ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
Length = 1984
Score = 239 bits (610), Expect = 2e-61
Identities = 117/178 (65%), Positives = 139/178 (78%)
Frame = +2
Query: 2 EYCEKVLEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIG 181
E CEKVLEVF+ +L+SG+ PN TF +KG ++HGKIIKLGI Y++F+G
Sbjct: 427 EQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVG 486
Query: 182 TALTDMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAV 361
TALTDMYAK GDI SS++VF+RM EKNE+SWT MIQ LAE+GFA E+L LFEEMER S V
Sbjct: 487 TALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEV 546
Query: 362 APNELTFLAVLSACSHCGFVDKAFRHFESMERVYGIKPKGRHYTCLVDLLARSGCLTE 535
APNEL L+VL ACSHCG VDK +F SME+VYGIKPKG+HYTC+VDLL+RSG L E
Sbjct: 547 APNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYE 604
Score = 87.8 bits (216), Expect = 9e-16
Identities = 50/167 (29%), Positives = 87/167 (52%)
Frame = +2
Query: 14 KVLEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIGTALT 193
+ L++F ++L SG PN TF G I G ++K G + + + +L
Sbjct: 167 EALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLI 226
Query: 194 DMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAVAPNE 373
+ + G+I +R+VF RM++++ VSWTA++ A E G EA +F+EM R NE
Sbjct: 227 TLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPER-----NE 281
Query: 374 LTFLAVLSACSHCGFVDKAFRHFESMERVYGIKPKGRHYTCLVDLLA 514
+++ A+++ S G+ ++A + F M + G KP + C + LA
Sbjct: 282 ISWSAMIARYSQSGYAEEALKLFSKMVQ-EGFKPNISCFACTLSALA 327
Score = 84.3 bits (207), Expect = 1e-14
Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 30/203 (14%)
Frame = +2
Query: 5 YCEKVLEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIGT 184
Y E+ L++FS+M+ G PN F G +IHG + K+GI +VFIG+
Sbjct: 296 YAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGS 355
Query: 185 ALTDMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAVA 364
+L D+Y K G R VF + EKN V W +M+ + NG EE LFE + ++ V+
Sbjct: 356 SLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVS 415
Query: 365 ------------------------------PNELTFLAVLSACSHCGFVDKAFRHFESME 454
PN+ TF +VL AC+ +DK +
Sbjct: 416 WGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKII 475
Query: 455 RVYGIKPKGRHYTCLVDLLARSG 523
++ GI+ T L D+ A+ G
Sbjct: 476 KL-GIQYDIFVGTALTDMYAKCG 497
>emb|CBI34885.3| unnamed protein product [Vitis vinifera]
Length = 728
Score = 239 bits (610), Expect = 2e-61
Identities = 117/178 (65%), Positives = 139/178 (78%)
Frame = +2
Query: 2 EYCEKVLEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIG 181
E CEKVLEVF+ +L+SG+ PN TF +KG ++HGKIIKLGI Y++F+G
Sbjct: 427 EQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVG 486
Query: 182 TALTDMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAV 361
TALTDMYAK GDI SS++VF+RM EKNE+SWT MIQ LAE+GFA E+L LFEEMER S V
Sbjct: 487 TALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEV 546
Query: 362 APNELTFLAVLSACSHCGFVDKAFRHFESMERVYGIKPKGRHYTCLVDLLARSGCLTE 535
APNEL L+VL ACSHCG VDK +F SME+VYGIKPKG+HYTC+VDLL+RSG L E
Sbjct: 547 APNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYE 604
Score = 87.8 bits (216), Expect = 9e-16
Identities = 50/167 (29%), Positives = 87/167 (52%)
Frame = +2
Query: 14 KVLEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIGTALT 193
+ L++F ++L SG PN TF G I G ++K G + + + +L
Sbjct: 167 EALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLI 226
Query: 194 DMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAVAPNE 373
+ + G+I +R+VF RM++++ VSWTA++ A E G EA +F+EM R NE
Sbjct: 227 TLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPER-----NE 281
Query: 374 LTFLAVLSACSHCGFVDKAFRHFESMERVYGIKPKGRHYTCLVDLLA 514
+++ A+++ S G+ ++A + F M + G KP + C + LA
Sbjct: 282 ISWSAMIARYSQSGYAEEALKLFSKMVQ-EGFKPNISCFACTLSALA 327
Score = 84.3 bits (207), Expect = 1e-14
Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 30/203 (14%)
Frame = +2
Query: 5 YCEKVLEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIGT 184
Y E+ L++FS+M+ G PN F G +IHG + K+GI +VFIG+
Sbjct: 296 YAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGS 355
Query: 185 ALTDMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAVA 364
+L D+Y K G R VF + EKN V W +M+ + NG EE LFE + ++ V+
Sbjct: 356 SLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVS 415
Query: 365 ------------------------------PNELTFLAVLSACSHCGFVDKAFRHFESME 454
PN+ TF +VL AC+ +DK +
Sbjct: 416 WGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKII 475
Query: 455 RVYGIKPKGRHYTCLVDLLARSG 523
++ GI+ T L D+ A+ G
Sbjct: 476 KL-GIQYDIFVGTALTDMYAKCG 497
>emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
Length = 728
Score = 239 bits (610), Expect = 2e-61
Identities = 117/178 (65%), Positives = 139/178 (78%)
Frame = +2
Query: 2 EYCEKVLEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIG 181
E CEKVLEVF+ +L+SG+ PN TF +KG ++HGKIIKLGI Y++F+G
Sbjct: 427 EQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVG 486
Query: 182 TALTDMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAV 361
TALTDMYAK GDI SS++VF+RM EKNE+SWT MIQ LAE+GFA E+L LFEEMER S V
Sbjct: 487 TALTDMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEV 546
Query: 362 APNELTFLAVLSACSHCGFVDKAFRHFESMERVYGIKPKGRHYTCLVDLLARSGCLTE 535
APNEL L+VL ACSHCG VDK +F SME+VYGIKPKG+HYTC+VDLL+RSG L E
Sbjct: 547 APNELMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYE 604
Score = 87.8 bits (216), Expect = 9e-16
Identities = 50/167 (29%), Positives = 87/167 (52%)
Frame = +2
Query: 14 KVLEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIGTALT 193
+ L++F ++L SG PN TF G I G ++K G + + + +L
Sbjct: 167 EALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFEHYLSVSNSLI 226
Query: 194 DMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAVAPNE 373
+ + G+I +R+VF RM++++ VSWTA++ A E G EA +F+EM R NE
Sbjct: 227 TLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEMPER-----NE 281
Query: 374 LTFLAVLSACSHCGFVDKAFRHFESMERVYGIKPKGRHYTCLVDLLA 514
+++ A+++ S G+ ++A + F M + G KP + C + LA
Sbjct: 282 ISWSAMIARYSQSGYAEEALKLFSKMVQ-EGFKPNISCFACTLSALA 327
Score = 83.2 bits (204), Expect = 2e-14
Identities = 60/203 (29%), Positives = 88/203 (43%), Gaps = 30/203 (14%)
Frame = +2
Query: 5 YCEKVLEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIGT 184
Y E+ L++FS+M+ G PN F G +IHG + K+GI +VFIG+
Sbjct: 296 YAEEALKLFSKMVQEGFKPNISCFACTLSALASLRALSAGINIHGHVTKIGIDKDVFIGS 355
Query: 185 ALTDMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERR---- 352
+L D+Y K G R VF + EKN V W +M+ + NG EE LFE + +
Sbjct: 356 SLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXS 415
Query: 353 --------------------------SAVAPNELTFLAVLSACSHCGFVDKAFRHFESME 454
S PN+ TF +VL AC+ +DK +
Sbjct: 416 WGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKII 475
Query: 455 RVYGIKPKGRHYTCLVDLLARSG 523
++ GI+ T L D+ A+ G
Sbjct: 476 KL-GIQYDIFVGTALTDMYAKCG 497
>ref|XP_002524665.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536026|gb|EEF37684.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 2000
Score = 225 bits (574), Expect = 3e-57
Identities = 109/178 (61%), Positives = 138/178 (77%)
Frame = +2
Query: 2 EYCEKVLEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIG 181
E +++ EVF++M+L GE PN TF +KGK++HGKI+KLGI + ++G
Sbjct: 427 EQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKGKNLHGKIVKLGIQCDTYVG 486
Query: 182 TALTDMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAV 361
TALTDMYAKSGDI+SS+KVF RM +KNEVSWTAMIQ LAE+G AEE+L LFEEME+ S++
Sbjct: 487 TALTDMYAKSGDIESSKKVFNRMPKKNEVSWTAMIQGLAESGLAEESLTLFEEMEKTSSI 546
Query: 362 APNELTFLAVLSACSHCGFVDKAFRHFESMERVYGIKPKGRHYTCLVDLLARSGCLTE 535
APNE+ FLAVL ACSH G VDK +F SME VYG+KPKGRH+TC+VD+L+R+G L E
Sbjct: 547 APNEVMFLAVLFACSHSGLVDKGLWYFNSMEAVYGLKPKGRHFTCVVDMLSRAGRLFE 604
Score = 88.2 bits (217), Expect = 7e-16
Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 30/203 (14%)
Frame = +2
Query: 5 YCEKVLEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIGT 184
Y E+ L +F +M+ G PN F + G +IHG + K+G +VF+ +
Sbjct: 296 YPEESLRLFCRMIQEGFKPNISCFSSILSALASVEALQAGMNIHGHVTKIGFEKDVFVSS 355
Query: 185 ALTDMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAVA 364
+L DMY K G+ K R +F + EKN VSW AM+ + NG EEA LF M R+ V+
Sbjct: 356 SLIDMYCKCGETKDGRFLFDTILEKNMVSWNAMVGGYSLNGHMEEAKYLFNIMPVRNNVS 415
Query: 365 ------------------------------PNELTFLAVLSACSHCGFVDKAFRHFESME 454
PN+ TF ++L AC+ +DK ++
Sbjct: 416 WSAIIAGHLDCEQFDEMFEVFNEMILLGEIPNKSTFSSLLCACASTASLDKG-KNLHGKI 474
Query: 455 RVYGIKPKGRHYTCLVDLLARSG 523
GI+ T L D+ A+SG
Sbjct: 475 VKLGIQCDTYVGTALTDMYAKSG 497
Score = 73.6 bits (179), Expect = 2e-11
Identities = 46/167 (27%), Positives = 86/167 (51%)
Frame = +2
Query: 14 KVLEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIGTALT 193
+ +++F ++L S PN TF G + G I+K G +++ + +L
Sbjct: 167 EAMKLFIKLLESEVKPNKVTFTSVVRACANLGDFGLGMSVLGLIVKTGYEHDLAVSNSLI 226
Query: 194 DMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAVAPNE 373
+ + G+I +R+VF RM+EK+ VSWTA++ E EA +F+EM +R NE
Sbjct: 227 TLCLRMGEIHLAREVFDRMEEKDVVSWTAILDLYVEMDELGEARRIFDEMPQR-----NE 281
Query: 374 LTFLAVLSACSHCGFVDKAFRHFESMERVYGIKPKGRHYTCLVDLLA 514
+++ A+++ G+ +++ R F M + G KP ++ ++ LA
Sbjct: 282 VSWSAMIARYCQSGYPEESLRLFCRMIQ-EGFKPNISCFSSILSALA 327
Score = 60.5 bits (145), Expect = 2e-07
Identities = 32/78 (41%), Positives = 48/78 (61%)
Frame = +2
Query: 182 TALTDMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAV 361
TAL + K G ++ S F+R +N VSWTA I +NGF+ EA+ LF ++ S V
Sbjct: 122 TALISGFMKYGRVRESMWYFERNPFQNVVSWTAAISGYVQNGFSVEAMKLFIKL-LESEV 180
Query: 362 APNELTFLAVLSACSHCG 415
PN++TF +V+ AC++ G
Sbjct: 181 KPNKVTFTSVVRACANLG 198
>gb|ACG43136.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 788
Score = 191 bits (484), Expect = 8e-47
Identities = 93/172 (54%), Positives = 123/172 (71%)
Frame = +2
Query: 20 LEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIGTALTDM 199
L F ML SG P T E G+ +H +I+KLGI +F+GTAL+DM
Sbjct: 496 LNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVKLGIEDNIFMGTALSDM 555
Query: 200 YAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAVAPNELT 379
YAKSGD+ SSR+VF +M EKN ++WTAM+Q LAENGFAEE+++LFE+M + +APNE T
Sbjct: 556 YAKSGDLDSSRRVFYQMPEKNNITWTAMVQGLAENGFAEESISLFEDM-IENGIAPNEHT 614
Query: 380 FLAVLSACSHCGFVDKAFRHFESMERVYGIKPKGRHYTCLVDLLARSGCLTE 535
FLA+L ACSHCG V++A +FE+M+ +GI PK +HYTC+VD+LAR+GCL E
Sbjct: 615 FLAILFACSHCGLVEQAIHYFETMQ-AHGIPPKSKHYTCMVDVLARAGCLPE 665
Score = 72.4 bits (176), Expect = 4e-11
Identities = 56/203 (27%), Positives = 86/203 (42%), Gaps = 31/203 (15%)
Frame = +2
Query: 14 KVLEVFSQMLLSGENPNGFTFXXXXXXXXXXXXXEKGKDIHGKIIKLGIHYEVFIGTALT 193
+ L+++SQML G PN F G IH +K+G +F+ ++L
Sbjct: 362 EALKLYSQMLADGCRPNISCFSSVLSACATLQDLRGGTRIHANALKMGSSTNLFVSSSLI 421
Query: 194 DMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEMERRSAVA--- 364
DMY K +++VF + EKN V W ++I + NG EA LF +M R++V+
Sbjct: 422 DMYCKCKQCTYAQRVFNSLPEKNTVCWNSLISGYSWNGKMVEAEGLFNKMPARNSVSWNT 481
Query: 365 ---------------------------PNELTFLAVLSACSH-CGFVDKAFRHFESMERV 460
P E+T +VL AC++ C H E ++
Sbjct: 482 MISGYAENRRFGDALNYFYAMLASGHIPGEITLSSVLLACANLCSLEMGRMVHAEIVK-- 539
Query: 461 YGIKPKGRHYTCLVDLLARSGCL 529
GI+ T L D+ A+SG L
Sbjct: 540 LGIEDNIFMGTALSDMYAKSGDL 562
Score = 56.6 bits (135), Expect = 2e-06
Identities = 32/80 (40%), Positives = 44/80 (55%)
Frame = +2
Query: 167 EVFIGTALTDMYAKSGDIKSSRKVFKRMQEKNEVSWTAMIQALAENGFAEEALNLFEEME 346
+V TAL D+YA GD+ +R+V M +NEVSW +I + G EAL L+ +M
Sbjct: 312 DVVSWTALLDVYADLGDLYGARRVLDAMPARNEVSWGTLIARHEQKGDTAEALKLYSQM- 370
Query: 347 RRSAVAPNELTFLAVLSACS 406
PN F +VLSAC+
Sbjct: 371 LADGCRPNISCFSSVLSACA 390