BLASTX nr result
ID: Coptis24_contig00036833
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00036833
(378 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002324070.1| predicted protein [Populus trichocarpa] gi|2... 106 2e-21
emb|CBI22243.3| unnamed protein product [Vitis vinifera] 103 2e-20
ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containi... 103 2e-20
ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containi... 101 7e-20
ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226... 100 9e-20
>ref|XP_002324070.1| predicted protein [Populus trichocarpa] gi|222867072|gb|EEF04203.1|
predicted protein [Populus trichocarpa]
Length = 546
Score = 106 bits (265), Expect = 2e-21
Identities = 51/124 (41%), Positives = 78/124 (62%)
Frame = +3
Query: 6 RNKEPNKTLQFFEQMRLRDVKPDKFTFPFVIRACADLGLVKKGQWVHGQVIKVCLSVDVF 185
++K P+K + + QM R VKPDKFTF F+++ C L K G VHG+V+K V+ F
Sbjct: 90 QSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSF 149
Query: 186 IATNLIEFYVSCVSVSVAHKVFDEMPVKDTVSWTAIMSGYVNQGGSNMEMARNFFEEMPV 365
+ LI F+ +C + +A +F ++P + VSW+A+ +GY +G + +AR F+EMPV
Sbjct: 150 VRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARRG--ELGVARQIFDEMPV 207
Query: 366 KDLV 377
KDLV
Sbjct: 208 KDLV 211
Score = 63.9 bits (154), Expect = 1e-08
Identities = 35/121 (28%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Frame = +3
Query: 15 EPNKTLQFFEQMRLRDVKPDKFTFPFVIRACADLGLVKKGQWVHGQVIKVCL-SVDVFIA 191
E + L+ FE+MR PD+ T ++ ACADLG ++ G+ +H + ++ + V +
Sbjct: 256 EQRQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLSVLLG 315
Query: 192 TNLIEFYVSCVSVSVAHKVFDEMPVKDTVSWTAIMSGYVNQGGSNMEMARNFFEEMPVKD 371
L++ Y C S+ +A +VF +M KD +W +++ G G + E + F E +K+
Sbjct: 316 NALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAE-ESIKLFAEMQALKN 374
Query: 372 L 374
+
Sbjct: 375 I 375
>emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 103 bits (256), Expect = 2e-20
Identities = 50/124 (40%), Positives = 76/124 (61%)
Frame = +3
Query: 6 RNKEPNKTLQFFEQMRLRDVKPDKFTFPFVIRACADLGLVKKGQWVHGQVIKVCLSVDVF 185
++ P + + QM V+PDKFTFPFV++AC L VK G VHG+V ++ + F
Sbjct: 55 QSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTF 114
Query: 186 IATNLIEFYVSCVSVSVAHKVFDEMPVKDTVSWTAIMSGYVNQGGSNMEMARNFFEEMPV 365
+ LI F+ +C ++VA +FD +D V+W+A+ +GY +G + +AR F+EMPV
Sbjct: 115 VRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRG--ELGVARQLFDEMPV 172
Query: 366 KDLV 377
KDLV
Sbjct: 173 KDLV 176
Score = 58.9 bits (141), Expect = 4e-07
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Frame = +3
Query: 24 KTLQFFEQMRLRDVKPDKFTFPFVIRACADLGLVKKGQWVHGQVIKVCL-SVDVFIATNL 200
+ L+ FE+MR PD+ T ++ AC DLG + GQ +H + ++ + V + L
Sbjct: 224 QALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNAL 283
Query: 201 IEFYVSCVSVSVAHKVFDEMPVKDTVSWTAIMSGYVNQGGSNMEMARNFFEEM 359
I+ Y C S+ A +VF M KD +W +++ G G + E + + F EM
Sbjct: 284 IDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHG--HAEKSIHLFTEM 334
>ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 103 bits (256), Expect = 2e-20
Identities = 50/124 (40%), Positives = 76/124 (61%)
Frame = +3
Query: 6 RNKEPNKTLQFFEQMRLRDVKPDKFTFPFVIRACADLGLVKKGQWVHGQVIKVCLSVDVF 185
++ P + + QM V+PDKFTFPFV++AC L VK G VHG+V ++ + F
Sbjct: 90 QSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTF 149
Query: 186 IATNLIEFYVSCVSVSVAHKVFDEMPVKDTVSWTAIMSGYVNQGGSNMEMARNFFEEMPV 365
+ LI F+ +C ++VA +FD +D V+W+A+ +GY +G + +AR F+EMPV
Sbjct: 150 VRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRG--ELGVARQLFDEMPV 207
Query: 366 KDLV 377
KDLV
Sbjct: 208 KDLV 211
Score = 58.9 bits (141), Expect = 4e-07
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Frame = +3
Query: 24 KTLQFFEQMRLRDVKPDKFTFPFVIRACADLGLVKKGQWVHGQVIKVCL-SVDVFIATNL 200
+ L+ FE+MR PD+ T ++ AC DLG + GQ +H + ++ + V + L
Sbjct: 259 QALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNAL 318
Query: 201 IEFYVSCVSVSVAHKVFDEMPVKDTVSWTAIMSGYVNQGGSNMEMARNFFEEM 359
I+ Y C S+ A +VF M KD +W +++ G G + E + + F EM
Sbjct: 319 IDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHG--HAEKSIHLFTEM 369
>ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 101 bits (251), Expect = 7e-20
Identities = 47/121 (38%), Positives = 74/121 (61%)
Frame = +3
Query: 15 EPNKTLQFFEQMRLRDVKPDKFTFPFVIRACADLGLVKKGQWVHGQVIKVCLSVDVFIAT 194
+P + + QM R V+PDKFTF FV++AC L VK G +HG+V+K + F+
Sbjct: 93 KPATAVSLYTQMENRGVRPDKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRN 152
Query: 195 NLIEFYVSCVSVSVAHKVFDEMPVKDTVSWTAIMSGYVNQGGSNMEMARNFFEEMPVKDL 374
LI F+ +C ++ A +FD ++ V W+A+ +GY +G +++AR F+EMP+KDL
Sbjct: 153 TLIYFHANCGDLATARALFDASAKREVVPWSALTAGYARRG--KLDVARQLFDEMPMKDL 210
Query: 375 V 377
V
Sbjct: 211 V 211
Score = 67.0 bits (162), Expect = 2e-09
Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 1/118 (0%)
Frame = +3
Query: 9 NKEPNKTLQFFEQMRLRDVKPDKFTFPFVIRACADLGLVKKGQWVHGQVIKVCLS-VDVF 185
NKE L+ F+ MR +PD T ++ A ADLG ++ G+ +H + +C + V
Sbjct: 257 NKE---ALEMFDAMRDLGQRPDDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVL 313
Query: 186 IATNLIEFYVSCVSVSVAHKVFDEMPVKDTVSWTAIMSGYVNQGGSNMEMARNFFEEM 359
++ LI+ Y C S+ A +VF M KDT SW +I+ G G + E + N F+EM
Sbjct: 314 LSNALIDMYAKCGSIGNALEVFQGMRKKDTSSWNSIIGGLALHG--HAEESINLFQEM 369
>ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 100 bits (250), Expect = 9e-20
Identities = 49/118 (41%), Positives = 76/118 (64%)
Frame = +3
Query: 24 KTLQFFEQMRLRDVKPDKFTFPFVIRACADLGLVKKGQWVHGQVIKVCLSVDVFIATNLI 203
+ L ++ M + + DKFTFPFVI+AC + + G+ VHG +IK S DVF+ NLI
Sbjct: 108 QALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLI 167
Query: 204 EFYVSCVSVSVAHKVFDEMPVKDTVSWTAIMSGYVNQGGSNMEMARNFFEEMPVKDLV 377
+FY C A KVF++M V++ VSWT ++SG ++ G +++ AR F+E+P K++V
Sbjct: 168 DFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCG--DLQEARRIFDEIPSKNVV 223
Score = 82.8 bits (203), Expect = 3e-14
Identities = 37/119 (31%), Positives = 72/119 (60%)
Frame = +3
Query: 3 LRNKEPNKTLQFFEQMRLRDVKPDKFTFPFVIRACADLGLVKKGQWVHGQVIKVCLSVDV 182
+RN++P + L+ F++M+ ++ P+++T +I+AC ++G++ G+ +H IK C+ + V
Sbjct: 233 IRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGV 292
Query: 183 FIATNLIEFYVSCVSVSVAHKVFDEMPVKDTVSWTAIMSGYVNQGGSNMEMARNFFEEM 359
++ T LI+ Y C S+ A +VF+ MP K +W ++++ G + A N F EM
Sbjct: 293 YLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLG--QEALNLFSEM 349
Score = 70.1 bits (170), Expect = 2e-10
Identities = 35/119 (29%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Frame = +3
Query: 6 RNKEPNKTLQFFEQMRLRDVKPDKFTFPFVIRACADLGLVKKGQWVHGQVIKVCLSVDVF 185
R + + L+ F +R + P + +FP I++C+ L + G+ H Q D+F
Sbjct: 1119 RGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLF 1178
Query: 186 IATNLIEFYVSCVSVSVAHKVFDEMPVKDTVSWTAIMSGYV--NQGGSNMEMARNFFEE 356
+++ LI+ Y C + A +FDE+P+++ VSWT++++GYV Q + + + ++F EE
Sbjct: 1179 VSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEE 1237
Score = 69.7 bits (169), Expect = 2e-10
Identities = 35/94 (37%), Positives = 54/94 (57%)
Frame = +3
Query: 36 FFEQMRLRDVKPDKFTFPFVIRACADLGLVKKGQWVHGQVIKVCLSVDVFIATNLIEFYV 215
F +R V+ + T V+ ACA G ++ G+ +H QVIK+ L +V + T++I+ Y
Sbjct: 1340 FHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYC 1399
Query: 216 SCVSVSVAHKVFDEMPVKDTVSWTAIMSGYVNQG 317
C V +A K FD M K+ SWTA+++GY G
Sbjct: 1400 KCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHG 1433