BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036821
         (446 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF02865.1|AC009324_14 Hypothetical protein [Arabidopsis thal...    57   2e-06
ref|NP_175782.2| F-box protein [Arabidopsis thaliana] gi|1222362...    57   2e-06
ref|NP_001117485.1| F-box protein [Arabidopsis thaliana] gi|3321...    57   2e-06
ref|XP_002879361.1| hypothetical protein ARALYDRAFT_344965 [Arab...    56   4e-06
gb|AAF98190.1|AC000107_13 F17F8.20 [Arabidopsis thaliana]              55   6e-06

>gb|AAF02865.1|AC009324_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 509

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 41/133 (30%), Positives = 56/133 (42%), Gaps = 5/133 (3%)
 Frame = +1

Query: 4   CSEIEVLTLGLGTKLWRKVQCDPF----DSVPWESCLVYLNGTFHWQSISRPAVHENGKR 171
           C E +VLTL  G  LWR +QC P     D +  +  L Y  G             +   R
Sbjct: 203 CDEHQVLTLENGNHLWRTIQCKPHYPKSDGICIDGILYYTAG------------FDMRAR 250

Query: 172 TNYITTFNVESEKFGIIT-HPAMKSNKRYLLSELRGRLWLIESDIAKELKVLNLWVLADY 348
            + +  F+V SEKF  I  H  M  N    L   +G+L  ++       K L  WVL + 
Sbjct: 251 VSMVVCFDVRSEKFSFINIHVFMLMNDSCTLINYKGKLGALQFTCLSP-KRLRFWVLVNA 309

Query: 349 EKQVWVHQLIRLP 387
           EK +W   +  LP
Sbjct: 310 EKNIWTKCIYALP 322


>ref|NP_175782.2| F-box protein [Arabidopsis thaliana]
           gi|122236223|sp|Q0WQM8.1|FB58_ARATH RecName: Full=F-box
           protein At1g53790 gi|110737247|dbj|BAF00571.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|332194880|gb|AEE33001.1| F-box protein [Arabidopsis
           thaliana]
          Length = 444

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 41/133 (30%), Positives = 56/133 (42%), Gaps = 5/133 (3%)
 Frame = +1

Query: 4   CSEIEVLTLGLGTKLWRKVQCDPF----DSVPWESCLVYLNGTFHWQSISRPAVHENGKR 171
           C E +VLTL  G  LWR +QC P     D +  +  L Y  G             +   R
Sbjct: 250 CDEHQVLTLENGNHLWRTIQCKPHYPKSDGICIDGILYYTAG------------FDMRAR 297

Query: 172 TNYITTFNVESEKFGIIT-HPAMKSNKRYLLSELRGRLWLIESDIAKELKVLNLWVLADY 348
            + +  F+V SEKF  I  H  M  N    L   +G+L  ++       K L  WVL + 
Sbjct: 298 VSMVVCFDVRSEKFSFINIHVFMLMNDSCTLINYKGKLGALQFTCLSP-KRLRFWVLVNA 356

Query: 349 EKQVWVHQLIRLP 387
           EK +W   +  LP
Sbjct: 357 EKNIWTKCIYALP 369


>ref|NP_001117485.1| F-box protein [Arabidopsis thaliana] gi|332194881|gb|AEE33002.1|
           F-box protein [Arabidopsis thaliana]
          Length = 461

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 41/133 (30%), Positives = 56/133 (42%), Gaps = 5/133 (3%)
 Frame = +1

Query: 4   CSEIEVLTLGLGTKLWRKVQCDPF----DSVPWESCLVYLNGTFHWQSISRPAVHENGKR 171
           C E +VLTL  G  LWR +QC P     D +  +  L Y  G             +   R
Sbjct: 250 CDEHQVLTLENGNHLWRTIQCKPHYPKSDGICIDGILYYTAG------------FDMRAR 297

Query: 172 TNYITTFNVESEKFGIIT-HPAMKSNKRYLLSELRGRLWLIESDIAKELKVLNLWVLADY 348
            + +  F+V SEKF  I  H  M  N    L   +G+L  ++       K L  WVL + 
Sbjct: 298 VSMVVCFDVRSEKFSFINIHVFMLMNDSCTLINYKGKLGALQFTCLSP-KRLRFWVLVNA 356

Query: 349 EKQVWVHQLIRLP 387
           EK +W   +  LP
Sbjct: 357 EKNIWTKCIYALP 369


>ref|XP_002879361.1| hypothetical protein ARALYDRAFT_344965 [Arabidopsis lyrata subsp.
           lyrata] gi|297325200|gb|EFH55620.1| hypothetical protein
           ARALYDRAFT_344965 [Arabidopsis lyrata subsp. lyrata]
          Length = 260

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 46/141 (32%), Positives = 61/141 (43%), Gaps = 11/141 (7%)
 Frame = +1

Query: 4   CSEIEVLTLGLGTKLWRKVQC-----DPFDSVPWESCLVYLNGTFHWQSISRPAVHENGK 168
           C E ++LTLG  T  WR + C        D +  + CL Y       Q++  P    +G 
Sbjct: 88  CEEYQILTLGTQTLSWRMIDCCLPHHPAHDGICIDGCLYY-------QAMVGPL---SGI 137

Query: 169 RTNYITTFNVESEKFGIITHP-AMKSNKRYLLSELRGRLWLIESD-----IAKELKVLNL 330
            T  I  F+V SEKF  +     M    +  L    GRL  I+SD     I  + + L L
Sbjct: 138 ST--IVCFDVRSEKFSFVKKARGMVLYGQSALVNYEGRLGAIQSDELHGIITGQTRSLEL 195

Query: 331 WVLADYEKQVWVHQLIRLPVM 393
           WVL D EK  W   +  LP M
Sbjct: 196 WVLVDAEKHEWSRHVYALPPM 216


>gb|AAF98190.1|AC000107_13 F17F8.20 [Arabidopsis thaliana]
          Length = 708

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
 Frame = +1

Query: 19  VLTLGLGTKLWRKVQCDPFDSVP-WESCLVYLNGTFHWQSISRPAVHENGKRTNYITTFN 195
           +LTLG G   WRK+QC PF   P WE   + +NG  ++ +       ++  R++ I  F+
Sbjct: 142 ILTLGTGELKWRKIQC-PFTHEPFWER--ICINGVLYYSAY----YSDSNGRSHLIACFD 194

Query: 196 VESEKFGIITHPAMKSNKRY-LLSELRGRLWLIESDIAKEL----KVLNLWVLADYEKQV 360
           V SEKF  I      +  RY  L   +G+L  I  + A+ +      L++WVL D EK  
Sbjct: 195 VRSEKFNFIA-----TKHRYDQLINYKGKLCGINLEYARHVGGFPVKLSMWVLEDVEKPE 249

Query: 361 W 363
           W
Sbjct: 250 W 250