BLASTX nr result
ID: Coptis24_contig00036791
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00036791
(335 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containi... 143 1e-32
emb|CAN71191.1| hypothetical protein VITISV_019119 [Vitis vinifera] 141 5e-32
ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containi... 125 4e-27
ref|XP_002306238.1| predicted protein [Populus trichocarpa] gi|2... 124 1e-26
ref|XP_003523930.1| PREDICTED: pentatricopeptide repeat-containi... 108 4e-22
>ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
[Vitis vinifera] gi|296088567|emb|CBI37558.3| unnamed
protein product [Vitis vinifera]
Length = 492
Score = 143 bits (361), Expect = 1e-32
Identities = 66/110 (60%), Positives = 86/110 (78%)
Frame = -1
Query: 335 KRNMHSWNIMIYSHVQNSLVFEALTIFNEFLKLGFKPDYFTFPSVFKACAGVREFSCLGI 156
+RNMHSWNI+I S+ N ++AL +F+ FLK+GF+PD+FT P VFKACAG+ + S LG
Sbjct: 69 ERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGD-SYLGK 127
Query: 155 SLHGLVFKLGYDEHVIVGCSVLDFYAKCGKLSDAYRLFVEMSVRDTVVWN 6
LH V ++G++E+V+VG SVLDFYAKCG L DA+R FV MS RD+VVWN
Sbjct: 128 MLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVWN 177
Score = 63.5 bits (153), Expect = 2e-08
Identities = 38/106 (35%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Frame = -1
Query: 317 WNIMIYSHVQNSLVFEALTIFNEFLKLGFKPDYFTFPSVFKACAGVREFSCLGISLHGLV 138
WN+MI + +AL F + L G K D T PS+ C G + G +HG V
Sbjct: 176 WNLMIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSILSVCGGEGDLM-KGKEIHGQV 234
Query: 137 FKLG-YDEHVIVGCSVLDFYAKCGKLSDAYRLFVEMSVRDTVVWNS 3
K + V +G S++D YAKCG L D+ ++F MS + V W S
Sbjct: 235 VKNQIFGCEVAIGNSLIDMYAKCGCLHDSEKVFTTMSELNLVTWTS 280
>emb|CAN71191.1| hypothetical protein VITISV_019119 [Vitis vinifera]
Length = 880
Score = 141 bits (356), Expect = 5e-32
Identities = 65/110 (59%), Positives = 85/110 (77%)
Frame = -1
Query: 335 KRNMHSWNIMIYSHVQNSLVFEALTIFNEFLKLGFKPDYFTFPSVFKACAGVREFSCLGI 156
+RNMHSWNI+I S+ N ++AL +F+ FLK+GF+PD+FT P VFKACAG+ + S LG
Sbjct: 499 ERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGD-SYLGK 557
Query: 155 SLHGLVFKLGYDEHVIVGCSVLDFYAKCGKLSDAYRLFVEMSVRDTVVWN 6
LH V ++G++E+V+VG SVLDFY KCG L DA+R FV MS RD+VVWN
Sbjct: 558 MLHSWVIRIGFEEYVVVGSSVLDFYEKCGGLVDAWRCFVNMSWRDSVVWN 607
>ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 502
Score = 125 bits (314), Expect = 4e-27
Identities = 60/110 (54%), Positives = 79/110 (71%)
Frame = -1
Query: 332 RNMHSWNIMIYSHVQNSLVFEALTIFNEFLKLGFKPDYFTFPSVFKACAGVREFSCLGIS 153
RNMHSWNI+I S+V NS F+AL +FNEF LGF PD++T P +FKA G+ + + LG
Sbjct: 71 RNMHSWNILIASYVHNSFYFDALNVFNEFRHLGFLPDHYTLPQMFKASVGIGD-AYLGKR 129
Query: 152 LHGLVFKLGYDEHVIVGCSVLDFYAKCGKLSDAYRLFVEMSVRDTVVWNS 3
LH KLG+ +V+VG +VLDFYAKCG + DA ++F +M +DTV WNS
Sbjct: 130 LHCWTIKLGFVGYVVVGSTVLDFYAKCGIVGDARKVFDDMIFKDTVSWNS 179
Score = 64.3 bits (155), Expect = 1e-08
Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Frame = -1
Query: 320 SWNIMIYSHVQNSLVFEALTIFNEFLKLGFKPDYFTFPSVFKACAGVREFSCLGISLHGL 141
SWN MI + + + +AL F L G D+ T PSV AC G + G +H L
Sbjct: 176 SWNSMISGYGRAGVYMDALDCFKRMLLEGANMDFMTIPSVLNACGGEGDLR-KGKEIHCL 234
Query: 140 VFKLG-YDEHVIVGCSVLDFYAKCGKLSDAYRLFVEMSVRDTVVWNS 3
V K + V VG S++D Y+KCG L ++ ++F MS + V W +
Sbjct: 235 VLKSPVFAADVAVGNSLIDMYSKCGSLLNSEKVFWNMSRLNIVTWTT 281
>ref|XP_002306238.1| predicted protein [Populus trichocarpa] gi|222855687|gb|EEE93234.1|
predicted protein [Populus trichocarpa]
Length = 512
Score = 124 bits (310), Expect = 1e-26
Identities = 61/110 (55%), Positives = 80/110 (72%)
Frame = -1
Query: 335 KRNMHSWNIMIYSHVQNSLVFEALTIFNEFLKLGFKPDYFTFPSVFKACAGVREFSCLGI 156
+RNMHSWNIM+ S+ QN +A+ IF+EFLK+GF+PD++T P +FKA AGV + LG
Sbjct: 69 ERNMHSWNIMMSSYAQNYCYSDAICIFDEFLKMGFRPDHYTLPPLFKAVAGVGD-CYLGF 127
Query: 155 SLHGLVFKLGYDEHVIVGCSVLDFYAKCGKLSDAYRLFVEMSVRDTVVWN 6
LHG V +LG++ +V+VG SVLDFY K GKL +A R+F M RD VWN
Sbjct: 128 VLHGWVIRLGFEGYVVVGSSVLDFYLKGGKLVEAKRVFSNMLWRDCGVWN 177
Score = 57.8 bits (138), Expect = 9e-07
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Frame = -1
Query: 332 RNMHSWNIMIYSHVQNSLVFEALTIFNEFLKLGFKPDYFTFPSVFKACAGVREFSCLGIS 153
R+ WN+MI + EAL++ ++ K D PS+ AC G + G
Sbjct: 171 RDCGVWNLMISGFGRAGFYVEALSLVRNMVEEEEKLDALVVPSILNACGGEGDLM-KGKE 229
Query: 152 LHGLVFKLG-YDEHVIVGCSVLDFYAKCGKLSDAYRLFVEMSVRDTVVWNS 3
+HG V K ++ V++ S++D YA+CG L+D+ ++F M + V W +
Sbjct: 230 IHGRVVKSTLFNVDVVISNSLIDMYARCGCLNDSEKVFRNMRSLNVVTWTT 280
>ref|XP_003523930.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 481
Score = 108 bits (270), Expect = 4e-22
Identities = 48/110 (43%), Positives = 75/110 (68%)
Frame = -1
Query: 335 KRNMHSWNIMIYSHVQNSLVFEALTIFNEFLKLGFKPDYFTFPSVFKACAGVREFSCLGI 156
+RNM+SWNIMI S+ Q+ + ++ L +F+EF +PD++T P +FKA GV + +C+G
Sbjct: 70 RRNMYSWNIMIASYAQHCMYYDVLMVFHEFKHCCLRPDHYTLPPLFKASVGVDD-ACIGS 128
Query: 155 SLHGLVFKLGYDEHVIVGCSVLDFYAKCGKLSDAYRLFVEMSVRDTVVWN 6
HGLV ++GY+ + IV S+L+FY K G + A+ +F MS +D+V WN
Sbjct: 129 MCHGLVIRIGYEGYAIVANSLLEFYVKFGAMPQAFCVFSNMSCKDSVTWN 178
Score = 59.7 bits (143), Expect = 2e-07
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Frame = -1
Query: 320 SWNIMIYSHVQNSLVFEALTIFNEFLKLG--FKPDYFTFPSVFKACAGVREFSCLGI-SL 150
+WN+MI + L +A+ F E L L + D+ T PSV AC +E L + +
Sbjct: 176 TWNLMISGFGRAGLYSDAMHCFREMLSLNEMMRVDFMTLPSVINACG--KEGDLLKVREV 233
Query: 149 HGLVFK-LGYDEHVIVGCSVLDFYAKCGKLSDAYRLFVEMSVRDTVVWNS 3
HG V + G+D +G +++D Y KCG L+D+ ++F + + V W +
Sbjct: 234 HGYVVRSFGFDADAAIGNALIDVYCKCGCLNDSEKIFRTIRHVNLVTWTT 283