BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036773
         (371 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containi...   107   8e-22
emb|CBI28334.3| unnamed protein product [Vitis vinifera]              107   8e-22
ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. l...    98   6e-19
ref|NP_001078414.1| pentatricopeptide repeat-containing protein ...    97   1e-18
ref|NP_001078415.1| pentatricopeptide repeat-containing protein ...    97   1e-18

>ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  107 bits (268), Expect = 8e-22
 Identities = 46/59 (77%), Positives = 51/59 (86%)
 Frame = +1

Query: 1   LISSNKVVPIRIVKNLRVCCDCHSFIKLVSEVYNHQIIVRDQNRFHHFKNGSCSCNDYW 177
           LI  NK  PI IVKNLRVCCDCH F+KLVS+VYN QII+RDQNRFHHF+NG CSCN+YW
Sbjct: 558 LIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616


>emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  107 bits (268), Expect = 8e-22
 Identities = 46/59 (77%), Positives = 51/59 (86%)
 Frame = +1

Query: 1   LISSNKVVPIRIVKNLRVCCDCHSFIKLVSEVYNHQIIVRDQNRFHHFKNGSCSCNDYW 177
           LI  NK  PI IVKNLRVCCDCH F+KLVS+VYN QII+RDQNRFHHF+NG CSCN+YW
Sbjct: 546 LIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 604


>ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 595

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 42/59 (71%), Positives = 51/59 (86%)
 Frame = +1

Query: 1   LISSNKVVPIRIVKNLRVCCDCHSFIKLVSEVYNHQIIVRDQNRFHHFKNGSCSCNDYW 177
           LIS+ +  PIR+VKNL+VC DCH  IKLVS+VYN +I+VRD++RFHHFKNGSCSC DYW
Sbjct: 537 LISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g21065 gi|332658994|gb|AEE84394.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 42/59 (71%), Positives = 50/59 (84%)
 Frame = +1

Query: 1   LISSNKVVPIRIVKNLRVCCDCHSFIKLVSEVYNHQIIVRDQNRFHHFKNGSCSCNDYW 177
           LIS+ +  PI +VKNLRVC DCH  IKLVS+VYN +I+VRD++RFHHFKNGSCSC DYW
Sbjct: 537 LISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595


>ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|332658995|gb|AEE84395.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 42/59 (71%), Positives = 50/59 (84%)
 Frame = +1

Query: 1   LISSNKVVPIRIVKNLRVCCDCHSFIKLVSEVYNHQIIVRDQNRFHHFKNGSCSCNDYW 177
           LIS+ +  PI +VKNLRVC DCH  IKLVS+VYN +I+VRD++RFHHFKNGSCSC DYW
Sbjct: 404 LISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462