BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036761
         (475 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat...   200   1e-49
ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat...   191   7e-47
ref|NP_196448.2| pentatricopeptide repeat-containing protein [Ar...   176   2e-42
emb|CAC08331.1| putative protein [Arabidopsis thaliana]               176   2e-42
ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat...   175   4e-42

>ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
           gi|296085293|emb|CBI29025.3| unnamed protein product
           [Vitis vinifera]
          Length = 854

 Score =  200 bits (508), Expect = 1e-49
 Identities = 96/158 (60%), Positives = 116/158 (73%)
 Frame = -1

Query: 475 IANDFFLWASQQKGYVHNCYTYNTMASIHSRFGKTTRLKFLANDVVNSRCQMTPGALGFF 296
           IA  FF WAS Q G+ HNCYTYN MAS  S   +   L  L+ D+VNSRC M+PGALGFF
Sbjct: 110 IAYRFFNWASDQGGFNHNCYTYNAMASCLSHARQNAPLSLLSMDIVNSRCAMSPGALGFF 169

Query: 295 IRCLSSHGLVDEAVYFFQQSKRLRLCVVNSYSYNCLIEALAKSGRFELIEMWLGEMRGDG 116
           IRCL S GLV+EA   F Q K +RLCV NSYS+NCL+EA++KSG  +L+EM L EM   G
Sbjct: 170 IRCLGSTGLVEEANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSG 229

Query: 115 WDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVE 2
           W+ DK+TLT +LQAYCN+ KF +AL VFN I+ RGWV+
Sbjct: 230 WEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVD 267


>ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Cucumis sativus]
           gi|449510601|ref|XP_004163711.1| PREDICTED: putative
           pentatricopeptide repeat-containing protein At5g08310,
           mitochondrial-like [Cucumis sativus]
          Length = 849

 Score =  191 bits (484), Expect = 7e-47
 Identities = 91/158 (57%), Positives = 116/158 (73%)
 Frame = -1

Query: 475 IANDFFLWASQQKGYVHNCYTYNTMASIHSRFGKTTRLKFLANDVVNSRCQMTPGALGFF 296
           IA+ FF WAS+Q GY HNC T+N +ASI S   K   L+ +A DV+N RC MTP ALG F
Sbjct: 104 IAHMFFTWASKQHGYRHNCNTFNAIASILSHARKNAPLRAVAMDVLNFRCSMTPRALGVF 163

Query: 295 IRCLSSHGLVDEAVYFFQQSKRLRLCVVNSYSYNCLIEALAKSGRFELIEMWLGEMRGDG 116
           +RCL S GLV+EA Y F Q + + LC+ N+YSYNCL+E L+K+   + IE  L EM+  G
Sbjct: 164 LRCLGSVGLVEEANYLFDQVRSMDLCIPNNYSYNCLLEILSKTNSIDSIENRLMEMKDFG 223

Query: 115 WDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVE 2
           W+VDK+TLTP+L AYCNAGKF +ALIVFN + +RGWV+
Sbjct: 224 WEVDKYTLTPVLMAYCNAGKFDKALIVFNDMHERGWVD 261


>ref|NP_196448.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|223635617|sp|P0C8Q6.1|PP368_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At5g08310, mitochondrial; Flags: Precursor
           gi|332003898|gb|AED91281.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 832

 Score =  176 bits (446), Expect = 2e-42
 Identities = 88/156 (56%), Positives = 110/156 (70%), Gaps = 2/156 (1%)
 Frame = -1

Query: 463 FFLWASQQKGYVHNCYTYNTMASIHSRFGKTTRLKFLANDVVNSRCQMTPGALGFFIRCL 284
           FF WAS+Q+GY ++ Y YN MASI SR  +   LK L  DV+NSRC M+PGA GFFIRCL
Sbjct: 92  FFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLNSRCFMSPGAFGFFIRCL 151

Query: 283 SSHGLVDEAVYFFQQSKRLRLCVVNSYSYNCLIEALAK--SGRFELIEMWLGEMRGDGWD 110
            + GLVDEA   F + + + LCV N+Y+YNCL+EA++K  S   EL+E  L EMR  G+ 
Sbjct: 152 GNAGLVDEASSVFDRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARLKEMRDCGFH 211

Query: 109 VDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVE 2
            DKFTLTP+LQ YCN GK + AL VFN I  RGW++
Sbjct: 212 FDKFTLTPVLQVYCNTGKSERALSVFNEILSRGWLD 247


>emb|CAC08331.1| putative protein [Arabidopsis thaliana]
          Length = 1280

 Score =  176 bits (446), Expect = 2e-42
 Identities = 88/156 (56%), Positives = 110/156 (70%), Gaps = 2/156 (1%)
 Frame = -1

Query: 463 FFLWASQQKGYVHNCYTYNTMASIHSRFGKTTRLKFLANDVVNSRCQMTPGALGFFIRCL 284
           FF WAS+Q+GY ++ Y YN MASI SR  +   LK L  DV+NSRC M+PGA GFFIRCL
Sbjct: 92  FFNWASKQEGYRNDMYAYNAMASILSRARQNASLKALVVDVLNSRCFMSPGAFGFFIRCL 151

Query: 283 SSHGLVDEAVYFFQQSKRLRLCVVNSYSYNCLIEALAK--SGRFELIEMWLGEMRGDGWD 110
            + GLVDEA   F + + + LCV N+Y+YNCL+EA++K  S   EL+E  L EMR  G+ 
Sbjct: 152 GNAGLVDEASSVFDRVREMGLCVPNAYTYNCLLEAISKSNSSSVELVEARLKEMRDCGFH 211

Query: 109 VDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVE 2
            DKFTLTP+LQ YCN GK + AL VFN I  RGW++
Sbjct: 212 FDKFTLTPVLQVYCNTGKSERALSVFNEILSRGWLD 247


>ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score =  175 bits (443), Expect = 4e-42
 Identities = 88/159 (55%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
 Frame = -1

Query: 475 IANDFFLWASQQKGYVHNCYTYNTMASIHSRFGKTTRLKFLANDVVNSR-CQMTPGALGF 299
           +A+ FF WAS Q G+ H CYTYN++ASI SR  +T+ LK L   + +S  C  TPGALGF
Sbjct: 84  LAHSFFHWASNQ-GFRHTCYTYNSIASILSRSHQTSPLKTLLKQISDSAPCSFTPGALGF 142

Query: 298 FIRCLSSHGLVDEAVYFFQQSKRLRLCVVNSYSYNCLIEALAKSGRFELIEMWLGEMRGD 119
            IRCL   GL  EA + F + +   LCV N Y YNCL+EAL+KSG  +LIE  L EM+G 
Sbjct: 143 LIRCLGHAGLAREAHHLFDEMRLKGLCVPNDYCYNCLLEALSKSGEVDLIEARLEEMKGF 202

Query: 118 GWDVDKFTLTPILQAYCNAGKFKEALIVFNRIFDRGWVE 2
           GW+ DKFTLTP+LQAYCNA +F EAL V+N + ++GWV+
Sbjct: 203 GWEFDKFTLTPLLQAYCNARRFDEALRVYNVMREKGWVD 241