BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036712
         (260 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containi...    88   6e-16
ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containi...    74   2e-11
ref|NP_188784.3| pentatricopeptide repeat-containing protein [Ar...    68   7e-10
ref|XP_002883307.1| hypothetical protein ARALYDRAFT_318888 [Arab...    65   6e-09
ref|XP_003602124.1| Pentatricopeptide repeat-containing protein ...    64   2e-08

>ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score = 88.2 bits (217), Expect = 6e-16
 Identities = 46/83 (55%), Positives = 59/83 (71%)
 Frame = -2

Query: 250 NLIKHYLSQRCFKQAFNIYTQTRRKGNTLHAVIPILLKACASLSLLNTGKSLHAESTKCG 71
           +LI+ YLSQ   ++A  +YT  RRKG  L  V P++LKACASLS++  GK+LHAES K G
Sbjct: 65  HLIRSYLSQGAPREALLVYTGLRRKGVYLLGVAPLVLKACASLSIVKHGKALHAESIKNG 124

Query: 70  VASNVMIGTSLVSFYSKCSVIFD 2
           V  +VMIGTSLV  Y+KC  + D
Sbjct: 125 VDFDVMIGTSLVCMYAKCGNVVD 147


>ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g21470-like [Glycine max]
          Length = 535

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 38/81 (46%), Positives = 54/81 (66%)
 Frame = -2

Query: 244 IKHYLSQRCFKQAFNIYTQTRRKGNTLHAVIPILLKACASLSLLNTGKSLHAESTKCGVA 65
           I++++ Q   + A   Y QTR +G    +V P+L KACASL  L+  K+LHAES K G  
Sbjct: 19  IRNHIQQGSLRCALLAYKQTRHEGVYDSSVAPLLFKACASLPFLHYVKALHAESIKAGSE 78

Query: 64  SNVMIGTSLVSFYSKCSVIFD 2
           S+V+IGT+L++ YSKC V+ D
Sbjct: 79  SDVIIGTALLTTYSKCGVVRD 99


>ref|NP_188784.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75274363|sp|Q9LVF9.1|PP245_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g21470 gi|11994382|dbj|BAB02341.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|332642992|gb|AEE76513.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
 Frame = -2

Query: 253 SNLIKHYLSQRCFKQAFNIYTQTRRKGNTLHAVIPILLKACASL-SLLNTGKSLHAESTK 77
           SNLIK+++S+    QA  +Y   RR+G      +P++L+ACA +   +  GK LH+ES K
Sbjct: 15  SNLIKNHISRGSPIQALVLYGGIRRRGVYFPGWVPLILRACACVVPRVVLGKLLHSESIK 74

Query: 76  CGVASNVMIGTSLVSFYSKCSVI 8
            GV S+VM+G+SL+S Y KC  +
Sbjct: 75  FGVCSDVMVGSSLISMYGKCGCV 97


>ref|XP_002883307.1| hypothetical protein ARALYDRAFT_318888 [Arabidopsis lyrata subsp.
           lyrata] gi|297329147|gb|EFH59566.1| hypothetical protein
           ARALYDRAFT_318888 [Arabidopsis lyrata subsp. lyrata]
          Length = 523

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
 Frame = -2

Query: 253 SNLIKHYLSQRCFKQAFNIYTQTRRKGNTLHAVIPILLKACASL-SLLNTGKSLHAESTK 77
           SNLIK+++S+    QA  +Y   RR+G      +P++LKACA +   +  GK LH+ES K
Sbjct: 15  SNLIKNHISRGSPIQALVLYGGIRRRGVYFPGWVPLILKACACVVPRVVLGKLLHSESIK 74

Query: 76  CGVASNVMIGTSLVSFYSK 20
            GV S+VM+G+SL+S Y K
Sbjct: 75  FGVCSDVMVGSSLISMYGK 93


>ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491172|gb|AES72375.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 616

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 36/76 (47%), Positives = 45/76 (59%)
 Frame = -2

Query: 229 SQRCFKQAFNIYTQTRRKGNTLHAVIPILLKACASLSLLNTGKSLHAESTKCGVASNVMI 50
           +Q   K+A  +Y QTR        VIP LLKAC S   L   KSLHAES K G   +V I
Sbjct: 29  NQASLKRALVLYKQTRHDTTHDPTVIPQLLKACDSHPFLPYVKSLHAESIKAGSDVDVFI 88

Query: 49  GTSLVSFYSKCSVIFD 2
           GT++V+ Y+KC V+ D
Sbjct: 89  GTAIVAAYAKCGVVCD 104