BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036704
         (314 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi...    64   6e-16
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t...    59   2e-15
ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi...    62   4e-15
gb|ABD96949.1| hypothetical protein [Cleome spinosa]                   52   2e-11
ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat...    53   4e-11

>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score = 64.3 bits (155), Expect(2) = 6e-16
 Identities = 29/42 (69%), Positives = 34/42 (80%)
 Frame = +3

Query: 3   LFKEMDKAGFKPNDITFIAVFTACSYSGMPLEGLHIFNSMTT 128
           LF EM+KAG KP+DITFIA+FTACSYSGM  E + + NSM T
Sbjct: 325 LFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIRLLNSMCT 366



 Score = 44.3 bits (103), Expect(2) = 6e-16
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = +1

Query: 124 LLTVYGIQPKSEHYACMVDFLSRAWLFEDAK 216
           + TVY ++PKSEHY C+VD L RA L ++AK
Sbjct: 364 MCTVYNMEPKSEHYGCIVDLLGRAGLLKEAK 394


>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 525

 Score = 59.3 bits (142), Expect(2) = 2e-15
 Identities = 27/40 (67%), Positives = 32/40 (80%)
 Frame = +3

Query: 3   LFKEMDKAGFKPNDITFIAVFTACSYSGMPLEGLHIFNSM 122
           LF +M+K G KP+DITFIAVFTACSYSGM  EGL + + M
Sbjct: 328 LFYDMEKVGVKPDDITFIAVFTACSYSGMAYEGLMLLDKM 367



 Score = 47.4 bits (111), Expect(2) = 2e-15
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
 Frame = +1

Query: 124 LLTVYGIQPKSEHYACMVDFLSRAWLFEDAKGVKQRIARR---KKQLLGARQEISPIC 288
           + +VY I PKSEHY C+VD LSRA LFE+A  + ++I       ++ L  R  +S  C
Sbjct: 367 MCSVYNIVPKSEHYGCLVDLLSRAGLFEEAMVMIRKITNSWNGSEETLAWRAFLSACC 424


>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score = 61.6 bits (148), Expect(2) = 4e-15
 Identities = 27/42 (64%), Positives = 34/42 (80%)
 Frame = +3

Query: 3   LFKEMDKAGFKPNDITFIAVFTACSYSGMPLEGLHIFNSMTT 128
           +F EM+K G KP+DITFIAVFTACSYSGM  EGL + + M++
Sbjct: 325 MFSEMEKTGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSS 366



 Score = 44.3 bits (103), Expect(2) = 4e-15
 Identities = 20/35 (57%), Positives = 27/35 (77%)
 Frame = +1

Query: 130 TVYGIQPKSEHYACMVDFLSRAWLFEDAKGVKQRI 234
           ++Y I+PKSEHY C+VD LSRA LF +A  + +RI
Sbjct: 366 SLYEIEPKSEHYGCLVDLLSRAGLFGEAMVMIRRI 400


>gb|ABD96949.1| hypothetical protein [Cleome spinosa]
          Length = 639

 Score = 52.4 bits (124), Expect(2) = 2e-11
 Identities = 22/40 (55%), Positives = 31/40 (77%)
 Frame = +3

Query: 6   FKEMDKAGFKPNDITFIAVFTACSYSGMPLEGLHIFNSMT 125
           F +M++AGF+P+DITFI V TAC++ G+  EG   F+SMT
Sbjct: 436 FSQMEEAGFRPDDITFIGVLTACNHGGLVEEGRRYFDSMT 475



 Score = 40.8 bits (94), Expect(2) = 2e-11
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = +1

Query: 136 YGIQPKSEHYACMVDFLSRAWLFEDAK 216
           Y IQPKSEHY+C++D L RA L ++A+
Sbjct: 478 YKIQPKSEHYSCLIDLLCRAGLLDEAE 504


>ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score = 52.8 bits (125), Expect(2) = 4e-11
 Identities = 22/43 (51%), Positives = 32/43 (74%)
 Frame = +3

Query: 3   LFKEMDKAGFKPNDITFIAVFTACSYSGMPLEGLHIFNSMTTD 131
           L++EM K G  PN++TF+A+ +ACS++G+  EGL IF SM  D
Sbjct: 801 LYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQED 843



 Score = 39.7 bits (91), Expect(2) = 4e-11
 Identities = 17/27 (62%), Positives = 19/27 (70%)
 Frame = +1

Query: 136 YGIQPKSEHYACMVDFLSRAWLFEDAK 216
           Y I+ K+EHY CMVD L RA   EDAK
Sbjct: 844 YNIEAKAEHYTCMVDLLGRAGRLEDAK 870