BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036665
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containi...   172   3e-41
ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containi...   172   3e-41
ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containi...   161   6e-38
emb|CBI28142.3| unnamed protein product [Vitis vinifera]              161   6e-38
ref|XP_002529360.1| pentatricopeptide repeat-containing protein,...   159   2e-37

>ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  172 bits (435), Expect = 3e-41
 Identities = 76/105 (72%), Positives = 93/105 (88%)
 Frame = -2

Query: 315 LIDMYAKCGCMDKSLEIFRRTKKKDTASWTALICGFAMNGQTNKALELFSQMEHCGGKPD 136
           LI+MY+KCGC+DKSLEIF   + KDTASWT++ICG AMNG+T++AL LFS+ME  G KPD
Sbjct: 471 LIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPD 530

Query: 135 DITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVD 1
           DITFIGVLSACSHGGLVEEG  +F+SMK+ H+IEPK+EHYGC++D
Sbjct: 531 DITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVID 575


>ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  172 bits (435), Expect = 3e-41
 Identities = 76/105 (72%), Positives = 93/105 (88%)
 Frame = -2

Query: 315 LIDMYAKCGCMDKSLEIFRRTKKKDTASWTALICGFAMNGQTNKALELFSQMEHCGGKPD 136
           LI+MY+KCGC+DKSLEIF   + KDTASWT++ICG AMNG+T++AL LFS+ME  G KPD
Sbjct: 517 LIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPD 576

Query: 135 DITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVD 1
           DITFIGVLSACSHGGLVEEG  +F+SMK+ H+IEPK+EHYGC++D
Sbjct: 577 DITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVID 621


>ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  161 bits (407), Expect = 6e-38
 Identities = 75/105 (71%), Positives = 90/105 (85%)
 Frame = -2

Query: 315 LIDMYAKCGCMDKSLEIFRRTKKKDTASWTALICGFAMNGQTNKALELFSQMEHCGGKPD 136
           LI+MYAKCG ++KSLEIF   K+KDTASWT++ICG AMNG+T+KALELF++M   G KPD
Sbjct: 406 LIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPD 465

Query: 135 DITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVD 1
           DITFIGVLSACSHGGLVEEG  +F SM   ++IEPK+EHYGCL+D
Sbjct: 466 DITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLID 510



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 25/80 (31%), Positives = 46/80 (57%)
 Frame = -2

Query: 315 LIDMYAKCGCMDKSLEIFRRTKKKDTASWTALICGFAMNGQTNKALELFSQMEHCGGKPD 136
           ++  Y  CG +D++ E+F R+  +D   WTA+I G+    + + A+ LF +M+     PD
Sbjct: 305 MVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPD 364

Query: 135 DITFIGVLSACSHGGLVEEG 76
             T + +L+ C+  G +E+G
Sbjct: 365 RFTLVALLTGCAQLGTLEQG 384


>emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  161 bits (407), Expect = 6e-38
 Identities = 75/105 (71%), Positives = 90/105 (85%)
 Frame = -2

Query: 315 LIDMYAKCGCMDKSLEIFRRTKKKDTASWTALICGFAMNGQTNKALELFSQMEHCGGKPD 136
           LI+MYAKCG ++KSLEIF   K+KDTASWT++ICG AMNG+T+KALELF++M   G KPD
Sbjct: 315 LIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPD 374

Query: 135 DITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVD 1
           DITFIGVLSACSHGGLVEEG  +F SM   ++IEPK+EHYGCL+D
Sbjct: 375 DITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLID 419


>ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531180|gb|EEF33027.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 683

 Score =  159 bits (403), Expect = 2e-37
 Identities = 73/105 (69%), Positives = 92/105 (87%)
 Frame = -2

Query: 315 LIDMYAKCGCMDKSLEIFRRTKKKDTASWTALICGFAMNGQTNKALELFSQMEHCGGKPD 136
           LI+MYAKCG ++K+LEIF   + KDTASWT++ICG AMNG+T+KALELFS+M+  G +PD
Sbjct: 411 LIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGKTSKALELFSKMKQAGVRPD 470

Query: 135 DITFIGVLSACSHGGLVEEGCCYFDSMKRTHKIEPKIEHYGCLVD 1
           DITFIGVLSACSHGGLVEEG  +F+SM+  ++I+PK+EHYGCLVD
Sbjct: 471 DITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVD 515



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 24/80 (30%), Positives = 47/80 (58%)
 Frame = -2

Query: 315 LIDMYAKCGCMDKSLEIFRRTKKKDTASWTALICGFAMNGQTNKALELFSQMEHCGGKPD 136
           ++  YA CG ++++ E+F  +  +D   WTA+I G+    + ++A+ LF +M+    KPD
Sbjct: 310 MVSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPD 369

Query: 135 DITFIGVLSACSHGGLVEEG 76
               + +L+ C+  G +E+G
Sbjct: 370 KFIVVSLLTGCAQTGAIEQG 389