BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036592
         (333 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO73527.1| gag-pol polyprotein [Glycine max]                       56   3e-06

>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 34/109 (31%), Positives = 53/109 (48%)
 Frame = -2

Query: 332 DKMLGVGKSHSDKRGLGYNDANASSSNTSRAITFVKAKEHPATMASPSVSRNNVRAHKKL 153
           D++L +GK+  ++RGLG+N   A  +  +    FV AK    T  S  +SR++    KK 
Sbjct: 441 DEVLLLGKNAGNQRGLGFNPKFAGRTTMTE---FVPAKNRTGTTMSQHLSRHHGTQQKKS 497

Query: 152 PVQKVRFESKSIVKHKVFTCYACGRMGHLAPFCWYNHYSSFYGNVFWNS 6
                        K K + C+ CG+ GH+ PFC++ H    +G    NS
Sbjct: 498 -------------KRKKWRCHYCGKYGHIKPFCYHLHGHPHHGTQSSNS 533