BLASTX nr result

ID: Coptis24_contig00036528 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036528
         (347 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270086.1| PREDICTED: uncharacterized protein LOC100255...    57   2e-06
ref|XP_003618966.1| hypothetical protein MTR_6g029390 [Medicago ...    56   3e-06
ref|XP_002319695.1| predicted protein [Populus trichocarpa] gi|2...    55   6e-06

>ref|XP_002270086.1| PREDICTED: uncharacterized protein LOC100255594 [Vitis vinifera]
           gi|296084605|emb|CBI25626.3| unnamed protein product
           [Vitis vinifera]
          Length = 88

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/55 (52%), Positives = 32/55 (58%)
 Frame = +3

Query: 165 MCPLRFILVFLSATLAGYLAWRTVRXXXXXXXXXXXXXATAVLPKQKQEFSFKKV 329
           MCPLRFILVF SA LAGY AWRTVR                V  K KQE +FK++
Sbjct: 1   MCPLRFILVFFSAVLAGYFAWRTVRSSQETGLSLEDSNLENVPSKDKQELNFKRM 55


>ref|XP_003618966.1| hypothetical protein MTR_6g029390 [Medicago truncatula]
           gi|355493981|gb|AES75184.1| hypothetical protein
           MTR_6g029390 [Medicago truncatula]
           gi|388522841|gb|AFK49482.1| unknown [Medicago
           truncatula]
          Length = 90

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 28/55 (50%), Positives = 32/55 (58%)
 Frame = +3

Query: 165 MCPLRFILVFLSATLAGYLAWRTVRXXXXXXXXXXXXXATAVLPKQKQEFSFKKV 329
           MCPLRFILVF SA LAGY AWRTVR                  P +K++F FKK+
Sbjct: 1   MCPLRFILVFFSAVLAGYFAWRTVRSSPNIDLACDDSIEEEKSPFKKEDFDFKKM 55


>ref|XP_002319695.1| predicted protein [Populus trichocarpa] gi|222858071|gb|EEE95618.1|
           predicted protein [Populus trichocarpa]
          Length = 89

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 29/56 (51%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +3

Query: 165 MCPLRFILVFLSATLAGYLAWRTVR-XXXXXXXXXXXXXATAVLPKQKQEFSFKKV 329
           MCPLRFILVF SA LAGY AWRTVR              A     ++KQEF+FK++
Sbjct: 1   MCPLRFILVFFSAVLAGYFAWRTVRSSPEIDDFVSDDSTAEKTSLREKQEFNFKRI 56


Top