BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036502
         (434 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]      92   1e-17
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                          92   1e-17
gb|ABD63103.1| gag-pol polyprotein, related [Asparagus officinalis]    92   4e-17
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                  92   6e-17
gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sati...    91   1e-16

>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score = 92.0 bits (227), Expect(2) = 1e-17
 Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
 Frame = -3

Query: 432 GSCANLVSSAIVQKLCLKTFTHSQPHNLKWMNNSSKIAVTKKCSVPFSIGDYSDRVWCDV 253
           GSC NL S  +V+KL LK   H  P++++W+NNS  I + ++  VPF IG+Y D + CDV
Sbjct: 485 GSCHNLASKEMVEKLGLKLLKHPHPYHVQWLNNSGSIKIAQRVKVPFKIGEYIDTMECDV 544

Query: 252 VDMDIGHLPLGRPWLYDR-KCHLQREAQY 169
             M + H+ LGRPW YDR   H  R  QY
Sbjct: 545 APMTVCHMLLGRPWQYDRSSLHCGRTNQY 573



 Score = 22.7 bits (47), Expect(2) = 1e-17
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = -1

Query: 191 IYSGKHNTYSLNW*KNKVILQP 126
           ++ G+ N Y++ W   ++IL+P
Sbjct: 565 LHCGRTNQYTIKWKGKELILKP 586


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score = 92.4 bits (228), Expect(2) = 1e-17
 Identities = 45/89 (50%), Positives = 58/89 (65%), Gaps = 1/89 (1%)
 Frame = -3

Query: 432 GSCANLVSSAIVQKLCLKTFTHSQPHNLKWMNNSSKIAVTKKCSVPFSIGDYSDRVWCDV 253
           GSC NL SS +V+KL L T  H  P++++W+NNS K+ VTK   + F+IG Y D V CDV
Sbjct: 501 GSCNNLASSDMVEKLALTTKPHPHPYHIQWLNNSGKVKVTKLVRINFAIGSYRDVVDCDV 560

Query: 252 VDMDIGHLPLGRPWLYDRKC-HLQREAQY 169
           V MD  ++ LGRPW +D  C H  R  QY
Sbjct: 561 VPMDACNILLGRPWQFDSDCMHHGRSNQY 589



 Score = 22.3 bits (46), Expect(2) = 1e-17
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 191 IYSGKHNTYSLNW*KNKVILQPSSDDGDAR 102
           ++ G+ N YSL     K+IL P S +   R
Sbjct: 581 MHHGRSNQYSLIHHDKKIILLPMSPEAIVR 610


>gb|ABD63103.1| gag-pol polyprotein, related [Asparagus officinalis]
          Length = 307

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 39/92 (42%), Positives = 59/92 (64%)
 Frame = -3

Query: 432 GSCANLVSSAIVQKLCLKTFTHSQPHNLKWMNNSSKIAVTKKCSVPFSIGDYSDRVWCDV 253
           GSC N VSSA++ KL LK  +H  P+ + W+N+++ + V ++C VP     Y D+VWCD+
Sbjct: 106 GSCINAVSSAMIAKLGLKVVSHPNPYKVSWINDTA-LNVQERCLVPLQFSIYKDKVWCDI 164

Query: 252 VDMDIGHLPLGRPWLYDRKCHLQREAQYLFFE 157
           + MD+G + LGRPWL+D   H+   +  L  E
Sbjct: 165 LKMDVGQVILGRPWLFDNVVHIFGRSNMLLLE 196


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 44/92 (47%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
 Frame = -3

Query: 432 GSCANLVSSAIVQKLCLKTFTHSQPHNLKWMNNSSKIAVTKKCSVPFSIG-DYSDRVWCD 256
           GSC N+ SS +++KL L T  H  P+ L+W+N  +++ V K+C V FSIG +YSD   CD
Sbjct: 407 GSCTNVASSTLIEKLSLPTQDHPSPYKLRWLNKGAEVRVDKQCLVTFSIGKNYSDEALCD 466

Query: 255 VVDMDIGHLPLGRPWLYDR-KCHLQREAQYLF 163
           V+ MD  HL LGRPW +DR   H  R+  Y F
Sbjct: 467 VLPMDACHLLLGRPWEFDRDSVHHGRDNTYTF 498


>gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
          Length = 1739

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 45/91 (49%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
 Frame = -3

Query: 432  GSCANLVSSAIVQKLCLKTFTHSQPHNLKWMNNSSKIAVTKKCSVPFSIGDYSDRVWCDV 253
            GSC NL SS +V+KL L T  H  P+ ++W+NNS K+ VTK   + F+IG+Y D V CDV
Sbjct: 856  GSCNNLASSEMVEKLALSTKPHPHPYYIQWLNNSGKVKVTKLVHINFAIGNYHDVVECDV 915

Query: 252  VDMDIGHLPLGRPWLYDR-KCHLQREAQYLF 163
            V M   ++ LGRPW +DR   H  R  QY F
Sbjct: 916  VPMQACNILLGRPWQFDRDSMHHGRSNQYSF 946