BLASTX nr result

ID: Coptis24_contig00036434 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036434
         (330 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281433.1| PREDICTED: uncharacterized protein LOC100245...    97   2e-18
ref|XP_002534353.1| conserved hypothetical protein [Ricinus comm...    92   3e-17
emb|CAN67325.1| hypothetical protein VITISV_012830 [Vitis vinifera]    91   1e-16
ref|XP_002299892.1| predicted protein [Populus trichocarpa] gi|2...    85   7e-15
ref|XP_003606621.1| Auxin-regulated protein [Medicago truncatula...    80   2e-13

>ref|XP_002281433.1| PREDICTED: uncharacterized protein LOC100245073 [Vitis vinifera]
           gi|297746132|emb|CBI16188.3| unnamed protein product
           [Vitis vinifera]
          Length = 428

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 49/63 (77%), Positives = 56/63 (88%), Gaps = 1/63 (1%)
 Frame = -2

Query: 329 EDKEYFSGSLIETKKNDFSALKRSSSYNADRSSKLDLKEKEIDGVRAKCIPRRPK-ISMK 153
           EDKEYFSGSLIETKK+ F ALKRSSSYNAD SS+L++ +KE+DGVRAKCIPRR K +S K
Sbjct: 344 EDKEYFSGSLIETKKDQFPALKRSSSYNADGSSQLEMGDKEVDGVRAKCIPRRSKTLSAK 403

Query: 152 KES 144
           KES
Sbjct: 404 KES 406


>ref|XP_002534353.1| conserved hypothetical protein [Ricinus communis]
           gi|223525445|gb|EEF28033.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 441

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 47/63 (74%), Positives = 52/63 (82%), Gaps = 1/63 (1%)
 Frame = -2

Query: 329 EDKEYFSGSLIETKKNDFSALKRSSSYNADRSSKLDLKEKEIDGVRAKCIPRRPK-ISMK 153
           EDKEYFSGSLIETKK +  ALKRSSSYNADRSS L L EKE++G R KCIPR+PK I  K
Sbjct: 353 EDKEYFSGSLIETKKEEVPALKRSSSYNADRSSHLHLAEKEVEGARTKCIPRKPKAIPTK 412

Query: 152 KES 144
           KE+
Sbjct: 413 KET 415


>emb|CAN67325.1| hypothetical protein VITISV_012830 [Vitis vinifera]
          Length = 942

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 43/53 (81%), Positives = 49/53 (92%)
 Frame = -2

Query: 329 EDKEYFSGSLIETKKNDFSALKRSSSYNADRSSKLDLKEKEIDGVRAKCIPRR 171
           EDKEYFSGSLIETKK+ F ALKRSSSYNAD SS+L++ +KE+DGVRAKCIPRR
Sbjct: 344 EDKEYFSGSLIETKKDQFPALKRSSSYNADGSSQLEMGDKEVDGVRAKCIPRR 396


>ref|XP_002299892.1| predicted protein [Populus trichocarpa] gi|222847150|gb|EEE84697.1|
           predicted protein [Populus trichocarpa]
          Length = 445

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 49/87 (56%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
 Frame = -2

Query: 329 EDKEYFSGSLIETKKNDFSAL--KRSSSYNADRSSKLDLKEKEIDGVRAKCIPRRPK-IS 159
           EDKEYFSGSLIETKK +  AL  KRS+SYNADRSS+L L EKEI+GVR KCIPR+ K ++
Sbjct: 344 EDKEYFSGSLIETKKVEVHALNLKRSNSYNADRSSQLHLAEKEIEGVRTKCIPRKSKAMA 403

Query: 158 MKKESRNDPNDTPRTNA*VSNKSGKES 78
            +KES  +       N   +N +G ++
Sbjct: 404 TRKESNVNVVVDHNNNNNNNNNNGSQA 430


>ref|XP_003606621.1| Auxin-regulated protein [Medicago truncatula]
           gi|355507676|gb|AES88818.1| Auxin-regulated protein
           [Medicago truncatula]
          Length = 422

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 41/61 (67%), Positives = 47/61 (77%)
 Frame = -2

Query: 329 EDKEYFSGSLIETKKNDFSALKRSSSYNADRSSKLDLKEKEIDGVRAKCIPRRPKISMKK 150
           EDKEYFSGSLIETKK +  A KRSSSYNAD SS+L + E E D VRAKCIPR+ K  + K
Sbjct: 337 EDKEYFSGSLIETKKVEAPAFKRSSSYNADSSSRLQIMEHEGDMVRAKCIPRKSKTLLTK 396

Query: 149 E 147
           +
Sbjct: 397 K 397


Top