BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036430
         (473 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containi...   148   4e-34
ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containi...   145   3e-33
ref|XP_002511599.1| pentatricopeptide repeat-containing protein,...   144   6e-33
gb|ABR16520.1| unknown [Picea sitchensis]                             143   1e-32
ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containi...   142   2e-32

>ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g44880-like [Glycine max]
          Length = 599

 Score =  148 bits (374), Expect = 4e-34
 Identities = 68/157 (43%), Positives = 104/157 (66%)
 Frame = -2

Query: 472 FVQSGLVRMYGEFGEIDKCRKLFDEISERDIVLWNTLIGGYLKCGALEEAEKIFQSMGNK 293
           +V + LV MY +FG +   RK+FDE+S R  V W  +I GY +CG + EA ++F  M ++
Sbjct: 161 YVATALVDMYVKFGVLGSARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDR 220

Query: 292 NVGSYNAMLGGYVKLGCVEMASTLFNEMSVRDIISWNTMIGGHARFGLVEMARKLFDEAP 113
           ++ ++NAM+ GYVK+GCV +A  LFNEM  R+++SW +M+ G+   G VE A+ +FD  P
Sbjct: 221 DIVAFNAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMP 280

Query: 112 GRNVATWSVIISGFSQGSRFGEALKMFKEMLVEGVMP 2
            +NV TW+ +I G+ Q  R  +AL++F+EM    V P
Sbjct: 281 EKNVFTWNAMIGGYCQNRRSHDALELFREMQTASVEP 317



 Score = 78.2 bits (191), Expect = 7e-13
 Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 39/193 (20%)
 Frame = -2

Query: 463 SGLVRMYGEFGEIDKCRKLFDEISERDIVLWNTLIGGYLKCGALEEAEKIFQSMGNKNVG 284
           + ++  Y + G +   R+LF+E+ ER++V W +++ GY   G +E A+ +F  M  KNV 
Sbjct: 226 NAMIDGYVKMGCVGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVF 285

Query: 283 SYNAMLGGYVKLGCVEMASTLFNEMSVR----------------------DIISW----- 185
           ++NAM+GGY +      A  LF EM                         D+  W     
Sbjct: 286 TWNAMIGGYCQNRRSHDALELFREMQTASVEPNEVTVVCVLPAVADLGALDLGRWIHRFA 345

Query: 184 ------------NTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRFGEAL 41
                         +I  +A+ G +  A+  F+    R  A+W+ +I+GF+      EAL
Sbjct: 346 LRKKLDRSARIGTALIDMYAKCGEITKAKLAFEGMTERETASWNALINGFAVNGCAKEAL 405

Query: 40  KMFKEMLVEGVMP 2
           ++F  M+ EG  P
Sbjct: 406 EVFARMIEEGFGP 418


>ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
           gi|297739328|emb|CBI28979.3| unnamed protein product
           [Vitis vinifera]
          Length = 585

 Score =  145 bits (366), Expect = 3e-33
 Identities = 67/158 (42%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
 Frame = -2

Query: 472 FVQSGLVRMYGEFGEIDKCRKLFDEISERDIVLWNTLIGGYLKCGALEEAEKIFQSMGNK 293
           FV +GL+ MY   GE    R +FD  SE+D+V WN+++GGY+ CG +E A+ +F  M  +
Sbjct: 146 FVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPER 205

Query: 292 NVGSYNAMLGGY-VKLGCVEMASTLFNEMSVRDIISWNTMIGGHARFGLVEMARKLFDEA 116
           +V S++ M+ GY  K+G V  A   F+ M  RD++SWN+MI G+A+ G +E+AR++FD+ 
Sbjct: 206 DVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKM 265

Query: 115 PGRNVATWSVIISGFSQGSRFGEALKMFKEMLVEGVMP 2
             +NV +WS++I G++Q     EAL +F++ML +G+ P
Sbjct: 266 LQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKP 303



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 53/186 (28%), Positives = 86/186 (46%), Gaps = 40/186 (21%)
 Frame = -2

Query: 445 YGE-FGEIDKCRKLFDEISERDIVLWNTLIGGYLKCGALEEAEKIFQSMGNKNVGSYNAM 269
           YG+  GE+++ R  FD +  RD+V WN++I GY K G +E A +IF  M  KNV S++ M
Sbjct: 217 YGKKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIM 276

Query: 268 LGGYVKLGCVEMASTLFNEMSVR------------------------------------- 200
           + GY +    + A  LF +M  +                                     
Sbjct: 277 IDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRM 336

Query: 199 --DIISWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRFGEALKMFKE 26
             DI+    ++  + + G  + AR++F+  P RNV +W+V+I G        EAL+ F +
Sbjct: 337 LLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQ 396

Query: 25  MLVEGV 8
           M +E +
Sbjct: 397 MEMERI 402


>ref|XP_002511599.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548779|gb|EEF50268.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 429

 Score =  144 bits (364), Expect = 6e-33
 Identities = 70/150 (46%), Positives = 100/150 (66%)
 Frame = -2

Query: 472 FVQSGLVRMYGEFGEIDKCRKLFDEISERDIVLWNTLIGGYLKCGALEEAEKIFQSMGNK 293
           +V + LV MY +FGE+   RK+FDE++ER +V W  LIGG ++ G +  A  +F  M  K
Sbjct: 124 YVSTALVDMYAKFGELCMARKMFDEMAERGVVSWTALIGGCMRSGDMGNARILFDQMPEK 183

Query: 292 NVGSYNAMLGGYVKLGCVEMASTLFNEMSVRDIISWNTMIGGHARFGLVEMARKLFDEAP 113
           +  +YNAML GYVK G +E A +LF++M  R++ISW +MI G+   G V  AR LFD  P
Sbjct: 184 DSAAYNAMLDGYVKAGDMESAQSLFDKMPARNVISWTSMIYGYCSGGDVLTARSLFDAMP 243

Query: 112 GRNVATWSVIISGFSQGSRFGEALKMFKEM 23
            RN+ +W+ +I G+SQ ++  EALK+F EM
Sbjct: 244 ERNLFSWNAMIGGYSQNNKSHEALKLFHEM 273



 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 40/188 (21%)
 Frame = -2

Query: 445 YGEFGEIDKCRKLFDEISERDIVLWNTLIGGYLKCGALEEAEKIFQSMGNKNVGSYNAML 266
           Y + G+++  + LFD++  R+++ W ++I GY   G +  A  +F +M  +N+ S+NAM+
Sbjct: 195 YVKAGDMESAQSLFDKMPARNVISWTSMIYGYCSGGDVLTARSLFDAMPERNLFSWNAMI 254

Query: 265 GGYVKLGCVEMASTLFNEMSVR-----------------------DIISW---------- 185
           GGY +      A  LF+EM  R                       D+ SW          
Sbjct: 255 GGYSQNNKSHEALKLFHEMQSRTLFEPDKVTVVSVLPAIADLGALDLGSWIHQFARLKKI 314

Query: 184 -------NTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRFGEALKMFKE 26
                    ++  +A+ G +  AR++FD  P +  A+W+ +I+GF+      EAL  F E
Sbjct: 315 DRSINVCTALVDMYAKCGEMLKARRVFDSMPKKEEASWNALINGFAVNGCADEALTAFSE 374

Query: 25  MLVEGVMP 2
           M  EGV P
Sbjct: 375 MKREGVKP 382



 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 41/121 (33%), Positives = 68/121 (56%)
 Frame = -2

Query: 385 DIVLWNTLIGGYLKCGALEEAEKIFQSMGNKNVGSYNAMLGGYVKLGCVEMASTLFNEMS 206
           D+ +   L+  Y K G L  A K+F  M  + V S+ A++GG ++ G +  A  LF++M 
Sbjct: 122 DLYVSTALVDMYAKFGELCMARKMFDEMAERGVVSWTALIGGCMRSGDMGNARILFDQMP 181

Query: 205 VRDIISWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRFGEALKMFKE 26
            +D  ++N M+ G+ + G +E A+ LFD+ P RNV +W+ +I G+  G     A  +F  
Sbjct: 182 EKDSAAYNAMLDGYVKAGDMESAQSLFDKMPARNVISWTSMIYGYCSGGDVLTARSLFDA 241

Query: 25  M 23
           M
Sbjct: 242 M 242



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 29/90 (32%), Positives = 51/90 (56%)
 Frame = -2

Query: 274 AMLGGYVKLGCVEMASTLFNEMSVRDIISWNTMIGGHARFGLVEMARKLFDEAPGRNVAT 95
           A++  Y K G + MA  +F+EM+ R ++SW  +IGG  R G +  AR LFD+ P ++ A 
Sbjct: 128 ALVDMYAKFGELCMARKMFDEMAERGVVSWTALIGGCMRSGDMGNARILFDQMPEKDSAA 187

Query: 94  WSVIISGFSQGSRFGEALKMFKEMLVEGVM 5
           ++ ++ G+ +      A  +F +M    V+
Sbjct: 188 YNAMLDGYVKAGDMESAQSLFDKMPARNVI 217


>gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  143 bits (361), Expect = 1e-32
 Identities = 69/150 (46%), Positives = 104/150 (69%)
 Frame = -2

Query: 472 FVQSGLVRMYGEFGEIDKCRKLFDEISERDIVLWNTLIGGYLKCGALEEAEKIFQSMGNK 293
           FV +GLV MY + G I+  R+LFD++ +RD+V WN +I GY++ G +E+A K+FQ +  +
Sbjct: 199 FVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKR 258

Query: 292 NVGSYNAMLGGYVKLGCVEMASTLFNEMSVRDIISWNTMIGGHARFGLVEMARKLFDEAP 113
           +V ++N M+ GY + G VE A  LF +M  ++++SWNTMI G+ + G V+ A KLF   P
Sbjct: 259 DVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMP 318

Query: 112 GRNVATWSVIISGFSQGSRFGEALKMFKEM 23
            RNV +W+ +ISGF+Q  +  EALK+FK M
Sbjct: 319 ERNVISWNAVISGFAQNGQVEEALKLFKTM 348



 Score =  130 bits (327), Expect = 1e-28
 Identities = 63/154 (40%), Positives = 98/154 (63%)
 Frame = -2

Query: 463 SGLVRMYGEFGEIDKCRKLFDEISERDIVLWNTLIGGYLKCGALEEAEKIFQSMGNKNVG 284
           + ++  Y + G I+   KLF EI +RD++ WNT++ GY +CG +E A ++F+ M  +N+ 
Sbjct: 233 NAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLV 292

Query: 283 SYNAMLGGYVKLGCVEMASTLFNEMSVRDIISWNTMIGGHARFGLVEMARKLFDEAPGRN 104
           S+N M+ GYV+ G V+ A  LF  M  R++ISWN +I G A+ G VE A KLF   P  N
Sbjct: 293 SWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECN 352

Query: 103 VATWSVIISGFSQGSRFGEALKMFKEMLVEGVMP 2
           V +W+ +I+G+SQ  +   ALK+F +M +  + P
Sbjct: 353 VVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKP 386



 Score =  104 bits (259), Expect = 9e-21
 Identities = 50/123 (40%), Positives = 81/123 (65%)
 Frame = -2

Query: 391 ERDIVLWNTLIGGYLKCGALEEAEKIFQSMGNKNVGSYNAMLGGYVKLGCVEMASTLFNE 212
           E ++ + N L+  Y K G +E A ++F  M  ++V S+NAM+ GYV+ G +E A  LF E
Sbjct: 195 ESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQE 254

Query: 211 MSVRDIISWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRFGEALKMF 32
           +  RD+I+WNTM+ G+A+ G VE A +LF++ P +N+ +W+ +I+G+ Q     EA K+F
Sbjct: 255 IPKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLF 314

Query: 31  KEM 23
           + M
Sbjct: 315 QIM 317



 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 36/181 (19%)
 Frame = -2

Query: 457 LVRMYGEFGEIDKCRKLFDEISERDIVLWNTLIGGYLKCGALEEAEKIFQSMGN------ 296
           LV +Y + G + + R++FDE+  +++V W  +I  Y +    +EA   F  M +      
Sbjct: 106 LVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPN 165

Query: 295 ------------------------------KNVGSYNAMLGGYVKLGCVEMASTLFNEMS 206
                                          NV   N ++  Y K GC+E A  LF++M 
Sbjct: 166 HFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMP 225

Query: 205 VRDIISWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRFGEALKMFKE 26
            RD++SWN MI G+ + GL+E A KLF E P R+V TW+ +++G++Q      A+++F++
Sbjct: 226 QRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEK 285

Query: 25  M 23
           M
Sbjct: 286 M 286



 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 54/191 (28%), Positives = 95/191 (49%), Gaps = 39/191 (20%)
 Frame = -2

Query: 457 LVRMYGEFGEIDKCRKLFDEISERDIVLWNTLIGGYLKCGALEEAEKIFQSMGNKNVGSY 278
           ++  Y + G + +  KLF  + ER+++ WN +I G+ + G +EEA K+F++M   NV S+
Sbjct: 297 MIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSW 356

Query: 277 NAMLGGYVKLGCVEMASTLFNEMSV----------------------------------- 203
           NAM+ GY + G  E A  LF +M +                                   
Sbjct: 357 NAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIR 416

Query: 202 ----RDIISWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRFGEALKM 35
                D++  NT++G +A+ G +E ARK+FD    ++ A+ S +I G++      E+L++
Sbjct: 417 SGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLEL 476

Query: 34  FKEMLVEGVMP 2
           F++M   G+ P
Sbjct: 477 FEQMQFTGLKP 487



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
 Frame = -2

Query: 391 ERDIVLWNTLIGGYLKCGALEEAEKIFQSMGNKNVGSYNAMLGGYVKLGCVEMASTLFNE 212
           + D+++ NTL+G Y KCG++E+A K+F  M  ++  S +AM+ GY   GC + +  LF +
Sbjct: 420 QSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQ 479

Query: 211 MSVR----DIISWNTMIGGHARFGLVEMARKLFD 122
           M       D +++  ++      GLV+  R+ FD
Sbjct: 480 MQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFD 513



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
 Frame = -2

Query: 364 LIGGYLKCGALEEAEKIFQSMGNKNV----GSYNAMLGGYVKLGCVEMASTLFNEM---- 209
           L+    K G L EA  I Q M    +     +Y+++L G +    +  A  L   M    
Sbjct: 35  LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94

Query: 208 -SVRDIISWNTMIGGHARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRFGEALKMF 32
              +DI   N ++  + + G +  AR++FDE P +NV +W+ +I+ +++     EAL  F
Sbjct: 95  FECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFF 154

Query: 31  KEMLVEGVMP 2
            EM   G+ P
Sbjct: 155 YEMQDVGIQP 164


>ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449511814|ref|XP_004164061.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  142 bits (359), Expect = 2e-32
 Identities = 65/157 (41%), Positives = 105/157 (66%)
 Frame = -2

Query: 472 FVQSGLVRMYGEFGEIDKCRKLFDEISERDIVLWNTLIGGYLKCGALEEAEKIFQSMGNK 293
           FV S LV MY + GEI+ CRK+FD + ++D+V WN+LI GY +CG +E A ++F+ M  K
Sbjct: 150 FVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEK 209

Query: 292 NVGSYNAMLGGYVKLGCVEMASTLFNEMSVRDIISWNTMIGGHARFGLVEMARKLFDEAP 113
           +  S+  ++ G  K G +E A  +F+ M +R+ +SWN MI G+ + G    A++LFD+ P
Sbjct: 210 DSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMP 269

Query: 112 GRNVATWSVIISGFSQGSRFGEALKMFKEMLVEGVMP 2
            R++ TW+ +I+G+ +  +F +ALK+F+ ML E + P
Sbjct: 270 ERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISP 306



 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 39/183 (21%)
 Frame = -2

Query: 433 GEIDKCRKLFDEISERDIVLWNTLIGGYLKCGALEEAEKIFQSMGNKNVGSYNAMLGGYV 254
           G+++  R +FD +  R+ V WN +I GY+K G    A+++F  M  +++ ++N+M+ GY 
Sbjct: 225 GKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYE 284

Query: 253 KLGCVEMASTLFNEMSVRDII-SWNTMIGG------------------------------ 167
           +      A  LF  M   DI  ++ T++G                               
Sbjct: 285 RNKQFTKALKLFEVMLREDISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGV 344

Query: 166 --------HARFGLVEMARKLFDEAPGRNVATWSVIISGFSQGSRFGEALKMFKEMLVEG 11
                   +++ G V+ A ++F   P + +  W+ +I G        + L++F EM   G
Sbjct: 345 LGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTG 404

Query: 10  VMP 2
           + P
Sbjct: 405 LKP 407