BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036390
         (535 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528160.1| pentatricopeptide repeat-containing protein,...   195   4e-48
ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containi...   192   3e-47
ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containi...   192   3e-47
ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containi...   190   1e-46
emb|CBI27156.3| unnamed protein product [Vitis vinifera]              190   1e-46

>ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532417|gb|EEF34211.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 569

 Score =  195 bits (495), Expect = 4e-48
 Identities = 91/113 (80%), Positives = 104/113 (92%)
 Frame = +3

Query: 3   GSYETDISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNR 182
           G Y TDISTYNILIN+YGRAGF +KME LFQSL +KNLKPDVVTWTSRLGAYSRKK+Y +
Sbjct: 457 GPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPDVVTWTSRLGAYSRKKLYTK 516

Query: 183 CIEIFEEMIDAGCYPDGGTAKVLLSACSSEDQVQQVTTMIRTMHKDMPTALPI 341
           C+EIFEEMIDAGC+PDG TAKVLLS+CSSEDQ++QVTT+IRTMHK+M T LP+
Sbjct: 517 CLEIFEEMIDAGCHPDGRTAKVLLSSCSSEDQIEQVTTVIRTMHKNMETVLPV 569



 Score = 61.2 bits (147), Expect = 9e-08
 Identities = 29/81 (35%), Positives = 43/81 (53%)
 Frame = +3

Query: 18  DISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNRCIEIF 197
           +I TY  L+N + R G C+K EE+F+ L     +PDV  + + + AYSR        EIF
Sbjct: 287 NICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIF 346

Query: 198 EEMIDAGCYPDGGTAKVLLSA 260
             M   GC PD  +  +++ A
Sbjct: 347 SLMQHMGCEPDRASYNIMVDA 367



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 30/103 (29%), Positives = 49/103 (47%)
 Frame = +3

Query: 9   YETDISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNRCI 188
           +E D+  YN L+  Y RAGF     E+F  +     +PD  ++   + AY R  ++    
Sbjct: 319 HEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQ 378

Query: 189 EIFEEMIDAGCYPDGGTAKVLLSACSSEDQVQQVTTMIRTMHK 317
            +FEEM   G  P   +  +LLSA S    V +   ++  +H+
Sbjct: 379 AVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHE 421


>ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like, partial [Cucumis sativus]
          Length = 312

 Score =  192 bits (488), Expect = 3e-47
 Identities = 87/113 (76%), Positives = 103/113 (91%)
 Frame = +3

Query: 3   GSYETDISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNR 182
           G    DISTYNILINVYGRAGF ++MEELFQ LP+KNL+PDVVTWTSR+GAYSRKK+Y R
Sbjct: 200 GPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKR 259

Query: 183 CIEIFEEMIDAGCYPDGGTAKVLLSACSSEDQVQQVTTMIRTMHKDMPTALPI 341
           C+E+FE+MIDAGCYPDGGTAKVLLSACSSE+Q++QVT ++RTMHKD+ T LP+
Sbjct: 260 CLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTMHKDLKTLLPV 312



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/103 (33%), Positives = 50/103 (48%)
 Frame = +3

Query: 9   YETDISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNRCI 188
           YE D+  YN L+  Y RAGF     E+F  +     +PD  ++   + AY R  ++    
Sbjct: 62  YEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQ 121

Query: 189 EIFEEMIDAGCYPDGGTAKVLLSACSSEDQVQQVTTMIRTMHK 317
            +FEEM   G  P   +  +LLSA SS   V +   +I  MHK
Sbjct: 122 AVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHK 164



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/81 (32%), Positives = 42/81 (51%)
 Frame = +3

Query: 18  DISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNRCIEIF 197
           +I T+  L+N   R G C+K EE+F+ +     +PDV  + + + +YSR        EIF
Sbjct: 30  NICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIF 89

Query: 198 EEMIDAGCYPDGGTAKVLLSA 260
             M   GC PD  +  +++ A
Sbjct: 90  SLMQHMGCEPDRASYNIMVDA 110


>ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score =  192 bits (488), Expect = 3e-47
 Identities = 87/113 (76%), Positives = 103/113 (91%)
 Frame = +3

Query: 3   GSYETDISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNR 182
           G    DISTYNILINVYGRAGF ++MEELFQ LP+KNL+PDVVTWTSR+GAYSRKK+Y R
Sbjct: 464 GPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPDVVTWTSRIGAYSRKKLYKR 523

Query: 183 CIEIFEEMIDAGCYPDGGTAKVLLSACSSEDQVQQVTTMIRTMHKDMPTALPI 341
           C+E+FE+MIDAGCYPDGGTAKVLLSACSSE+Q++QVT ++RTMHKD+ T LP+
Sbjct: 524 CLELFEKMIDAGCYPDGGTAKVLLSACSSEEQIEQVTNVVRTMHKDLKTLLPV 576



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 35/103 (33%), Positives = 50/103 (48%)
 Frame = +3

Query: 9   YETDISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNRCI 188
           YE D+  YN L+  Y RAGF     E+F  +     +PD  ++   + AY R  ++    
Sbjct: 326 YEPDVYAYNALMESYSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQ 385

Query: 189 EIFEEMIDAGCYPDGGTAKVLLSACSSEDQVQQVTTMIRTMHK 317
            +FEEM   G  P   +  +LLSA SS   V +   +I  MHK
Sbjct: 386 AVFEEMKRIGITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHK 428



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/81 (32%), Positives = 42/81 (51%)
 Frame = +3

Query: 18  DISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNRCIEIF 197
           +I T+  L+N   R G C+K EE+F+ +     +PDV  + + + +YSR        EIF
Sbjct: 294 NICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIF 353

Query: 198 EEMIDAGCYPDGGTAKVLLSA 260
             M   GC PD  +  +++ A
Sbjct: 354 SLMQHMGCEPDRASYNIMVDA 374


>ref|XP_003555869.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Glycine max]
          Length = 576

 Score =  190 bits (483), Expect = 1e-46
 Identities = 88/113 (77%), Positives = 102/113 (90%)
 Frame = +3

Query: 3   GSYETDISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNR 182
           GSY  DISTYNILIN YG+AGF ++ME+LFQ LPSK LKPDVVTWTSR+GAYS+KK+Y +
Sbjct: 464 GSYVADISTYNILINRYGQAGFIERMEDLFQLLPSKGLKPDVVTWTSRIGAYSKKKLYLK 523

Query: 183 CIEIFEEMIDAGCYPDGGTAKVLLSACSSEDQVQQVTTMIRTMHKDMPTALPI 341
           C+EIFEEMID GCYPDGGTAKVLL+ACS+EDQ +QVTT+IRTMHKDM T LP+
Sbjct: 524 CLEIFEEMIDDGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTMHKDMKTVLPV 576



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 30/81 (37%), Positives = 44/81 (54%)
 Frame = +3

Query: 18  DISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNRCIEIF 197
           +I TY  L+N + R G C+K EE+F+ +    L+PDV  + + + AYSR        EIF
Sbjct: 294 NICTYTALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYAYNALMEAYSRAGYPYGAAEIF 353

Query: 198 EEMIDAGCYPDGGTAKVLLSA 260
             M   GC PD  +  +L+ A
Sbjct: 354 SLMQHMGCEPDRASYNILVDA 374



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 29/80 (36%), Positives = 49/80 (61%)
 Frame = +3

Query: 27  TYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNRCIEIFEEM 206
           TY +LIN+YG+AG      +LF  + S + KP++ T+T+ + A++R+ +  +  E+FE+M
Sbjct: 262 TYTMLINLYGKAGKSFMALKLFHEMMSHDCKPNICTYTALVNAFAREGLCEKAEEVFEQM 321

Query: 207 IDAGCYPDGGTAKVLLSACS 266
            +AG  PD      L+ A S
Sbjct: 322 QEAGLEPDVYAYNALMEAYS 341



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 31/102 (30%), Positives = 52/102 (50%)
 Frame = +3

Query: 12  ETDISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNRCIE 191
           E D ++YNIL++ YG+AGF D  E +F+ +    + P + +    L AYS+    N+C E
Sbjct: 362 EPDRASYNILVDAYGKAGFQDDAEAVFKDMKRVGITPTMKSHMVLLSAYSKMGSVNKCEE 421

Query: 192 IFEEMIDAGCYPDGGTAKVLLSACSSEDQVQQVTTMIRTMHK 317
           I  +M  +G   D      +L+      Q  ++  ++R M K
Sbjct: 422 ILNQMCKSGLKLDTYVLNSMLNLYGRLGQFGKMEEVLRVMEK 463


>emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score =  190 bits (482), Expect = 1e-46
 Identities = 88/111 (79%), Positives = 102/111 (91%)
 Frame = +3

Query: 3   GSYETDISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNR 182
           G Y  DISTYNILIN+YGRAGF  +MEELF+SLP++NL PDVVTWTSR+GAYSR+K YNR
Sbjct: 515 GPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNR 574

Query: 183 CIEIFEEMIDAGCYPDGGTAKVLLSACSSEDQVQQVTTMIRTMHKDMPTAL 335
           C+E+FEEMIDAGCYPDGGTAKVLLSACS+ DQ+Q+VTT+IRTMHKDM T+L
Sbjct: 575 CLEVFEEMIDAGCYPDGGTAKVLLSACSNGDQIQEVTTVIRTMHKDMRTSL 625



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 29/81 (35%), Positives = 44/81 (54%)
 Frame = +3

Query: 18  DISTYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNRCIEIF 197
           +I T+  L+N + R G C+K EE+F+ L    L+PDV  + + + AYSR        EIF
Sbjct: 345 NICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIF 404

Query: 198 EEMIDAGCYPDGGTAKVLLSA 260
             M   GC PD  +  +++ A
Sbjct: 405 SLMQHMGCEPDRASYNIMVDA 425



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 27/81 (33%), Positives = 49/81 (60%)
 Frame = +3

Query: 24  STYNILINVYGRAGFCDKMEELFQSLPSKNLKPDVVTWTSRLGAYSRKKIYNRCIEIFEE 203
           +TY +LIN+YG+A       ++F  + S+  KP++ T+T+ + A++R+ +  +  EIFE+
Sbjct: 312 ATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQ 371

Query: 204 MIDAGCYPDGGTAKVLLSACS 266
           + +AG  PD      L+ A S
Sbjct: 372 LQEAGLEPDVYAYNALMEAYS 392