BLASTX nr result

ID: Coptis24_contig00036360 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036360
         (381 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004162101.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-spl...   160   1e-37
ref|XP_004142129.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   160   1e-37
ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   157   6e-37
ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 ho...   157   6e-37
ref|XP_002530492.1| cell cycle control protein cwf22, putative [...   156   1e-36

>ref|XP_004162101.1| PREDICTED: LOW QUALITY PROTEIN: pre-mRNA-splicing factor CWC22
           homolog, partial [Cucumis sativus]
          Length = 780

 Score =  160 bits (404), Expect = 1e-37
 Identities = 81/105 (77%), Positives = 93/105 (88%)
 Frame = -1

Query: 315 PEVGALVLKRTVWQLQTAYERSDRPKLLAASMFIAHLVNQQVAHEIVALEWLTVLLENPT 136
           PEVG L+L+R V QL+ AY+R+D+P+LLAA  FIAHLVNQQVAHEI+ALE LTVLLENPT
Sbjct: 319 PEVGDLLLRRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPT 378

Query: 135 DDSVEVAVGFVTECGSLLQDLSPKALAGIFEFFRGILYKGEIHNR 1
           DDSVEVAVGFVTECGS+L+DLSPK L GIFE FRGIL++GEI  R
Sbjct: 379 DDSVEVAVGFVTECGSILKDLSPKGLHGIFERFRGILHEGEIDKR 423


>ref|XP_004142129.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Cucumis sativus]
          Length = 797

 Score =  160 bits (404), Expect = 1e-37
 Identities = 81/105 (77%), Positives = 93/105 (88%)
 Frame = -1

Query: 315 PEVGALVLKRTVWQLQTAYERSDRPKLLAASMFIAHLVNQQVAHEIVALEWLTVLLENPT 136
           PEVG L+L+R V QL+ AY+R+D+P+LLAA  FIAHLVNQQVAHEI+ALE LTVLLENPT
Sbjct: 319 PEVGDLLLRRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLTVLLENPT 378

Query: 135 DDSVEVAVGFVTECGSLLQDLSPKALAGIFEFFRGILYKGEIHNR 1
           DDSVEVAVGFVTECGS+L+DLSPK L GIFE FRGIL++GEI  R
Sbjct: 379 DDSVEVAVGFVTECGSILKDLSPKGLHGIFERFRGILHEGEIDKR 423


>ref|XP_003541530.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
          Length = 860

 Score =  157 bits (398), Expect = 6e-37
 Identities = 80/105 (76%), Positives = 91/105 (86%)
 Frame = -1

Query: 315 PEVGALVLKRTVWQLQTAYERSDRPKLLAASMFIAHLVNQQVAHEIVALEWLTVLLENPT 136
           PEVG L+L+R V QL+ AY+R+D+P+LLAA  FIAHLVNQQ AHEI+ALE LTVLLE PT
Sbjct: 382 PEVGDLLLRRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQAAHEIIALELLTVLLEKPT 441

Query: 135 DDSVEVAVGFVTECGSLLQDLSPKALAGIFEFFRGILYKGEIHNR 1
           DDSVEVAVGFVTECGS+LQDLSPK L GIFE FRGIL++GEI  R
Sbjct: 442 DDSVEVAVGFVTECGSILQDLSPKGLHGIFERFRGILHEGEIDKR 486


>ref|XP_003530707.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Glycine max]
          Length = 871

 Score =  157 bits (398), Expect = 6e-37
 Identities = 80/105 (76%), Positives = 91/105 (86%)
 Frame = -1

Query: 315 PEVGALVLKRTVWQLQTAYERSDRPKLLAASMFIAHLVNQQVAHEIVALEWLTVLLENPT 136
           PEVG L+L+R V QL+ AY+R+D+P+LLAA  FIAHLVNQQ AHEI+ALE LTVLLE PT
Sbjct: 398 PEVGDLLLRRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQAAHEIIALELLTVLLEKPT 457

Query: 135 DDSVEVAVGFVTECGSLLQDLSPKALAGIFEFFRGILYKGEIHNR 1
           DDSVEVAVGFVTECGS+LQDLSPK L GIFE FRGIL++GEI  R
Sbjct: 458 DDSVEVAVGFVTECGSILQDLSPKGLHGIFERFRGILHEGEIDKR 502


>ref|XP_002530492.1| cell cycle control protein cwf22, putative [Ricinus communis]
           gi|223529949|gb|EEF31876.1| cell cycle control protein
           cwf22, putative [Ricinus communis]
          Length = 810

 Score =  156 bits (395), Expect = 1e-36
 Identities = 79/105 (75%), Positives = 91/105 (86%)
 Frame = -1

Query: 315 PEVGALVLKRTVWQLQTAYERSDRPKLLAASMFIAHLVNQQVAHEIVALEWLTVLLENPT 136
           PEVG L+L+R V QL+ AY+R+D+P+LLAA  FIAHLVNQQVAHEI+ALE L VLLENPT
Sbjct: 299 PEVGDLLLRRIVLQLKRAYKRNDKPQLLAAVKFIAHLVNQQVAHEIIALELLAVLLENPT 358

Query: 135 DDSVEVAVGFVTECGSLLQDLSPKALAGIFEFFRGILYKGEIHNR 1
           DDSVEVAVGFVTECGS+LQD+SPK L G FE FRGIL++GEI  R
Sbjct: 359 DDSVEVAVGFVTECGSILQDVSPKGLDGAFERFRGILHEGEIDKR 403


Top