BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036348
         (289 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001053783.1| Os04g0603800 [Oryza sativa Japonica Group] g...    72   5e-11
emb|CAD41876.2| OSJNBa0041A02.23 [Oryza sativa Japonica Group]         72   5e-11
gb|ABF98227.1| retrotransposon protein, putative, unclassified [...    70   2e-10
gb|AAP68389.1| putative polyprotein [Oryza sativa Japonica Group]      70   2e-10
gb|AAP53789.1| retrotransposon protein, putative, unclassified [...    68   9e-10

>ref|NP_001053783.1| Os04g0603800 [Oryza sativa Japonica Group]
           gi|113565354|dbj|BAF15697.1| Os04g0603800, partial
           [Oryza sativa Japonica Group]
          Length = 123

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 30/61 (49%), Positives = 40/61 (65%)
 Frame = -3

Query: 287 PMVDSEGQMLVEPITVLARRMISRHNKAVAQVLIHWYNTFPDGATWEDWTHIATNFPNFH 108
           P+VD +G +  EP+ VLARR++ R N+ V Q L+HW N  P+ ATWED   I   FP+F 
Sbjct: 63  PLVDEDGNIKTEPVAVLARRVVPRRNEPVTQWLVHWENLSPEDATWEDSAFIQATFPHFR 122

Query: 107 P 105
           P
Sbjct: 123 P 123


>emb|CAD41876.2| OSJNBa0041A02.23 [Oryza sativa Japonica Group]
          Length = 1373

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 30/61 (49%), Positives = 40/61 (65%)
 Frame = -3

Query: 287  PMVDSEGQMLVEPITVLARRMISRHNKAVAQVLIHWYNTFPDGATWEDWTHIATNFPNFH 108
            P+VD +G +  EP+ VLARR++ R N+ V Q L+HW N  P+ ATWED   I   FP+F 
Sbjct: 1313 PLVDEDGNIKTEPVAVLARRVVPRRNEPVTQWLVHWENLSPEDATWEDSAFIQATFPHFR 1372

Query: 107  P 105
            P
Sbjct: 1373 P 1373


>gb|ABF98227.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1160

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 31/61 (50%), Positives = 41/61 (67%)
 Frame = -3

Query: 287  PMVDSEGQMLVEPITVLARRMISRHNKAVAQVLIHWYNTFPDGATWEDWTHIATNFPNFH 108
            P+V ++G +  EP+ VLARR+I R N+ V Q LIHW N  P+ ATWE+ T I   FP+F 
Sbjct: 1100 PLVGADGTVKTEPLAVLARRVIPRQNEPVVQWLIHWENLTPEDATWENATFIQATFPHFR 1159

Query: 107  P 105
            P
Sbjct: 1160 P 1160


>gb|AAP68389.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1246

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 31/61 (50%), Positives = 41/61 (67%)
 Frame = -3

Query: 287  PMVDSEGQMLVEPITVLARRMISRHNKAVAQVLIHWYNTFPDGATWEDWTHIATNFPNFH 108
            P+V ++G +  EP+ VLARR+I R N+ V Q LIHW N  P+ ATWE+ T I   FP+F 
Sbjct: 1186 PLVGADGTVKTEPLAVLARRVIPRQNEPVVQWLIHWENLTPEDATWENATFIQATFPHFR 1245

Query: 107  P 105
            P
Sbjct: 1246 P 1246


>gb|AAP53789.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1611

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 32/61 (52%), Positives = 38/61 (62%)
 Frame = -3

Query: 287  PMVDSEGQMLVEPITVLARRMISRHNKAVAQVLIHWYNTFPDGATWEDWTHIATNFPNFH 108
            P +  +GQ+  EP  VL RRMI RHN+ V Q LI W N  P  ATWED ++I   FPNF 
Sbjct: 1551 PAIGPDGQIKTEPAAVLQRRMIPRHNEPVTQWLILWENLTPAEATWEDASYIQAAFPNFQ 1610

Query: 107  P 105
            P
Sbjct: 1611 P 1611