BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036322
         (439 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO23078.1| polyprotein [Glycine max]                               96   3e-33
emb|CAH66715.1| OSIGBa0118P15.5 [Oryza sativa Indica Group]            98   5e-29
gb|ABF96299.1| retrotransposon protein, putative, Ty3-gypsy subc...    94   6e-29
emb|CAE05310.2| OSJNBa0056L23.8 [Oryza sativa Japonica Group]          94   6e-29
gb|ABA98922.2| retrotransposon protein, putative, Ty3-gypsy subc...    97   1e-28

>gb|AAO23078.1| polyprotein [Glycine max]
          Length = 1552

 Score = 96.3 bits (238), Expect(2) = 3e-33
 Identities = 42/82 (51%), Positives = 56/82 (68%)
 Frame = +2

Query: 20   RAKAYFYWPGMKKDVVQLVTTCDVCQQCKGEHTFPGGLLQPLSIPEHAWQHISMDFIEGL 199
            R KA FYWP M++DV   +  C +CQQ K  +T P GLLQPL IP+  W+ ++MDFI GL
Sbjct: 1095 RLKAQFYWPKMQEDVKAYIQKCLICQQAKSNNTLPAGLLQPLPIPQQVWEDVAMDFITGL 1154

Query: 200  PKSEGKEVILVVVDRLSIVTYY 265
            P S G  VI+VV+DRL+   ++
Sbjct: 1155 PNSFGLSVIMVVIDRLTKYAHF 1176



 Score = 70.9 bits (172), Expect(2) = 3e-33
 Identities = 33/66 (50%), Positives = 47/66 (71%)
 Frame = +1

Query: 238  R*TKYSHLLCLTHPFTASTVAKLFMDNIYKLHGLPQSITSDRNKVFISSFWKTLFKSLGT 417
            R TKY+H + L   + +  VA+ FM +I KLHG+P+SI SDR++VF S+FW+ LFK  GT
Sbjct: 1169 RLTKYAHFIPLKADYNSKVVAEAFMSHIVKLHGIPRSIVSDRDRVFTSTFWQHLFKLQGT 1228

Query: 418  ELHLST 435
             L +S+
Sbjct: 1229 TLAMSS 1234


>emb|CAH66715.1| OSIGBa0118P15.5 [Oryza sativa Indica Group]
          Length = 1434

 Score = 98.2 bits (243), Expect(2) = 5e-29
 Identities = 45/82 (54%), Positives = 57/82 (69%)
 Frame = +2

Query: 2    IQGSYLRAKAYFYWPGMKKDVVQLVTTCDVCQQCKGEHTFPGGLLQPLSIPEHAWQHISM 181
            ++ +Y R K  FYWP +KK+V ++V+ C  CQ  K EH    GLL PL IPE AW HISM
Sbjct: 1077 VKVTYHRIKKIFYWPQLKKEVEKIVSECPTCQITKAEHVHSPGLLDPLQIPEMAWTHISM 1136

Query: 182  DFIEGLPKSEGKEVILVVVDRL 247
            DFIEGLPKS+GK++ +  V RL
Sbjct: 1137 DFIEGLPKSQGKDIFMENVYRL 1158



 Score = 54.7 bits (130), Expect(2) = 5e-29
 Identities = 22/44 (50%), Positives = 33/44 (75%)
 Frame = +1

Query: 304  LFMDNIYKLHGLPQSITSDRNKVFISSFWKTLFKSLGTELHLST 435
            +FM+N+Y+LHG+P  I  DR+K+F S  ++ +FKS+GT L  ST
Sbjct: 1150 IFMENVYRLHGMPLVIVFDRDKIFTSDLFQNVFKSMGTTLRFST 1193


>gb|ABF96299.1| retrotransposon protein, putative, Ty3-gypsy subclass, expressed
            [Oryza sativa Japonica Group]
          Length = 1822

 Score = 94.4 bits (233), Expect(2) = 6e-29
 Identities = 44/85 (51%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
 Frame = +2

Query: 14   YLRAKAYFYWPGMKKDVVQLVTTCDVCQQCKGEHTFPGGLLQPLSIPEHAWQHISMDFIE 193
            Y   K  F+W  MK+++V+ V  CDVCQ+ K EH  P GLLQPL IPE  W+ I MDFI 
Sbjct: 1411 YQDLKERFWWASMKREIVEYVAVCDVCQRVKAEHQKPAGLLQPLKIPEWKWEEIGMDFIT 1470

Query: 194  GLPK-SEGKEVILVVVDRLSIVTYY 265
            GLP+ S G + I V+VDRL+ V ++
Sbjct: 1471 GLPRTSSGHDSIWVIVDRLTKVAHF 1495



 Score = 58.2 bits (139), Expect(2) = 6e-29
 Identities = 27/66 (40%), Positives = 43/66 (65%)
 Frame = +1

Query: 238  R*TKYSHLLCLTHPFTASTVAKLFMDNIYKLHGLPQSITSDRNKVFISSFWKTLFKSLGT 417
            R TK +H + +   ++ S +A+L+M  I  LHG+P+ I SDR   F S+FWK L + +G+
Sbjct: 1488 RLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGS 1547

Query: 418  ELHLST 435
            +L+ ST
Sbjct: 1548 KLNFST 1553


>emb|CAE05310.2| OSJNBa0056L23.8 [Oryza sativa Japonica Group]
          Length = 1472

 Score = 94.4 bits (233), Expect(2) = 6e-29
 Identities = 44/85 (51%), Positives = 56/85 (65%), Gaps = 1/85 (1%)
 Frame = +2

Query: 14   YLRAKAYFYWPGMKKDVVQLVTTCDVCQQCKGEHTFPGGLLQPLSIPEHAWQHISMDFIE 193
            Y   K  F+W  MK+++ + V  CDVCQQ K EH  P GLLQPL IPE  W+ I MDFI 
Sbjct: 1061 YQDLKERFWWASMKREIAEYVAVCDVCQQVKAEHQKPAGLLQPLKIPEWKWEEIGMDFIT 1120

Query: 194  GLPK-SEGKEVILVVVDRLSIVTYY 265
            GLP+ S G + I V+VDRL+ V ++
Sbjct: 1121 GLPRTSSGHDSIWVIVDRLTKVAHF 1145



 Score = 58.2 bits (139), Expect(2) = 6e-29
 Identities = 27/66 (40%), Positives = 43/66 (65%)
 Frame = +1

Query: 238  R*TKYSHLLCLTHPFTASTVAKLFMDNIYKLHGLPQSITSDRNKVFISSFWKTLFKSLGT 417
            R TK +H + +   ++ S +A+L+M  I  LHG+P+ I SDR   F S+FWK L + +G+
Sbjct: 1138 RLTKVAHFIPVKTTYSGSRLAELYMARIVCLHGVPKKIVSDRGSQFTSNFWKKLQEEMGS 1197

Query: 418  ELHLST 435
            +L+ ST
Sbjct: 1198 KLNFST 1203


>gb|ABA98922.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1674

 Score = 97.4 bits (241), Expect(2) = 1e-28
 Identities = 45/80 (56%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
 Frame = +2

Query: 14   YLRAKAYFYWPGMKKDVVQLVTTCDVCQQCKGEHTFPGGLLQPLSIPEHAWQHISMDFIE 193
            Y   KAYF+W GMK+DV + V  CD+CQ+ K EH  P GLLQPL IPE  W+ I MDFI 
Sbjct: 1274 YQDIKAYFWWAGMKRDVAEYVALCDICQRVKAEHQRPAGLLQPLPIPEWKWEEIGMDFIT 1333

Query: 194  GLPKS-EGKEVILVVVDRLS 250
            GLP++  G + I V+VDRL+
Sbjct: 1334 GLPRTPSGYDSIWVIVDRLT 1353



 Score = 54.3 bits (129), Expect(2) = 1e-28
 Identities = 27/66 (40%), Positives = 40/66 (60%)
 Frame = +1

Query: 238  R*TKYSHLLCLTHPFTASTVAKLFMDNIYKLHGLPQSITSDRNKVFISSFWKTLFKSLGT 417
            R TK +HL+ +   F    +A+L+M ++    G P+ I SDR   F S FWK L ++LGT
Sbjct: 1351 RLTKSAHLVPVKTTFDGKKLAELYMTHVVCRFGCPKKIVSDRGTQFTSRFWKQLHEALGT 1410

Query: 418  ELHLST 435
            +L+ ST
Sbjct: 1411 DLNFST 1416