BLASTX nr result

ID: Coptis24_contig00036317 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036317
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311420.1| predicted protein [Populus trichocarpa] gi|2...   125   3e-27
ref|XP_002315994.1| predicted protein [Populus trichocarpa] gi|2...   120   1e-25
ref|XP_003628709.1| hypothetical protein MTR_8g065720 [Medicago ...   116   2e-24
ref|XP_002267536.1| PREDICTED: uncharacterized protein LOC100253...   116   2e-24
ref|XP_004135422.1| PREDICTED: uncharacterized protein LOC101217...   115   5e-24

>ref|XP_002311420.1| predicted protein [Populus trichocarpa] gi|222851240|gb|EEE88787.1|
           predicted protein [Populus trichocarpa]
          Length = 415

 Score =  125 bits (315), Expect = 3e-27
 Identities = 63/126 (50%), Positives = 86/126 (68%), Gaps = 16/126 (12%)
 Frame = +1

Query: 4   WSAVSKKMVTATKSLRKTRTNDESVERSVTELSIKQDPVFN----------------RND 135
           +++V+ + + A+ S+     +D+ +E+S+ +  IK D +F                 +  
Sbjct: 141 YASVNSRKIQASSSMN----HDKPLEQSLADFKIKDDHIFKGIVAAGPAEPRACGCVQPP 196

Query: 136 PRVDNISPYSAIENISVQKLAPEYKIGMENLIKTKTPNLKASKLWRDKPVVLHCVRRPGC 315
           P VD+++PYSAIENISVQKL PEYKIGME L+KTKTP +KAS+LWRDKP VL C+RRPGC
Sbjct: 197 PVVDSVAPYSAIENISVQKLTPEYKIGMERLVKTKTPPMKASELWRDKPAVLLCIRRPGC 256

Query: 316 IMCRAE 333
           IMCRAE
Sbjct: 257 IMCRAE 262


>ref|XP_002315994.1| predicted protein [Populus trichocarpa] gi|222865034|gb|EEF02165.1|
           predicted protein [Populus trichocarpa]
          Length = 406

 Score =  120 bits (300), Expect = 1e-25
 Identities = 62/126 (49%), Positives = 83/126 (65%), Gaps = 16/126 (12%)
 Frame = +1

Query: 4   WSAVSKKMVTATKSLRKTRTNDESVERSVTELSIKQDPVFN----------------RND 135
           +S+VS K +    S+      D+S+E+S+ +  IK   +F                 +  
Sbjct: 141 YSSVSSKKMQTISSMNY----DKSLEQSLADFKIKDGYIFKGIVAAGPAELRACGCVQPP 196

Query: 136 PRVDNISPYSAIENISVQKLAPEYKIGMENLIKTKTPNLKASKLWRDKPVVLHCVRRPGC 315
           P VD+++PYS+IENISVQKL PEYKIGME+L+KTKTP +KA +LWRDKP V+ C+RRPGC
Sbjct: 197 PVVDSVAPYSSIENISVQKLTPEYKIGMEHLVKTKTPPMKAVELWRDKPAVILCIRRPGC 256

Query: 316 IMCRAE 333
           IMCRAE
Sbjct: 257 IMCRAE 262


>ref|XP_003628709.1| hypothetical protein MTR_8g065720 [Medicago truncatula]
           gi|355522731|gb|AET03185.1| hypothetical protein
           MTR_8g065720 [Medicago truncatula]
          Length = 409

 Score =  116 bits (290), Expect = 2e-24
 Identities = 61/112 (54%), Positives = 73/112 (65%), Gaps = 16/112 (14%)
 Frame = +1

Query: 46  LRKTRTNDESVERSVTELSIKQDPVFNR------NDPRV----------DNISPYSAIEN 177
           +R    +D S E+S+TEL IK   VF         DPR           D ++PY AIEN
Sbjct: 150 MRSNTISDRSFEQSLTELKIKDGYVFKGIVASEPADPRACGCVQPPPVSDQVAPYVAIEN 209

Query: 178 ISVQKLAPEYKIGMENLIKTKTPNLKASKLWRDKPVVLHCVRRPGCIMCRAE 333
           ISVQK+ PEYKIGME L+K KTP +KA++LWRDKP V  C+RRPGCIMCRAE
Sbjct: 210 ISVQKITPEYKIGMEPLVKMKTPPMKAAELWRDKPAVFLCLRRPGCIMCRAE 261


>ref|XP_002267536.1| PREDICTED: uncharacterized protein LOC100253093 [Vitis vinifera]
           gi|297738213|emb|CBI27414.3| unnamed protein product
           [Vitis vinifera]
          Length = 417

 Score =  116 bits (290), Expect = 2e-24
 Identities = 66/130 (50%), Positives = 87/130 (66%), Gaps = 19/130 (14%)
 Frame = +1

Query: 1   LWSAVSKKMVTATKSLRKTRTN---DESVERSVTELSIKQDPVFN--------------- 126
           L S  S+K+++ +++   TR N   D S+E++V+E+ IK   V                 
Sbjct: 141 LSSVNSRKILSISRA--PTRANSIYDRSLEQAVSEIKIKDGLVIKGIVAAEPAEPRACGC 198

Query: 127 -RNDPRVDNISPYSAIENISVQKLAPEYKIGMENLIKTKTPNLKASKLWRDKPVVLHCVR 303
            +  P V+++ PYSAIEN+SVQKLAPEYKIGME L+KT TP +KAS+LWRDKP VL C+R
Sbjct: 199 VQPPPIVEDVCPYSAIENVSVQKLAPEYKIGMERLVKT-TPPMKASELWRDKPAVLLCIR 257

Query: 304 RPGCIMCRAE 333
           RPGCIMCRAE
Sbjct: 258 RPGCIMCRAE 267


>ref|XP_004135422.1| PREDICTED: uncharacterized protein LOC101217484 [Cucumis sativus]
           gi|449493522|ref|XP_004159330.1| PREDICTED:
           uncharacterized protein LOC101230345 [Cucumis sativus]
          Length = 413

 Score =  115 bits (287), Expect = 5e-24
 Identities = 61/122 (50%), Positives = 79/122 (64%), Gaps = 16/122 (13%)
 Frame = +1

Query: 16  SKKMVTATKSLRKTRTNDESVERSVTELSIKQDPVFNR---------------NDPR-VD 147
           SK+M    +S+R     D++VE++++E  I+    F                   P  VD
Sbjct: 137 SKRM----QSMRSRNFQDKTVEQAMSEFKIEDGYEFKGIVATELAGHIACGCVQPPHIVD 192

Query: 148 NISPYSAIENISVQKLAPEYKIGMENLIKTKTPNLKASKLWRDKPVVLHCVRRPGCIMCR 327
            I+PYSAIENIS+QKL PEYKIGME L+KTKTP +KAS LW+DKP ++ C+RRPGCIMCR
Sbjct: 193 KIAPYSAIENISIQKLTPEYKIGMERLVKTKTPPMKASSLWQDKPAIILCIRRPGCIMCR 252

Query: 328 AE 333
           AE
Sbjct: 253 AE 254


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