BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036306
         (367 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V...   164   5e-39
ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus comm...   151   6e-35
ref|XP_004137446.1| PREDICTED: DNA polymerase alpha subunit B-li...   139   2e-31
ref|XP_003552790.1| PREDICTED: DNA polymerase alpha subunit B-li...   130   1e-28
ref|XP_003537544.1| PREDICTED: DNA polymerase alpha subunit B-li...   127   7e-28

>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
           gi|297738371|emb|CBI27572.3| unnamed protein product
           [Vitis vinifera]
          Length = 623

 Score =  164 bits (416), Expect = 5e-39
 Identities = 84/120 (70%), Positives = 93/120 (77%)
 Frame = -2

Query: 366 ILKKCLTFCINYKLTASDLVSSWEVYYLNRQLNGSVVQNGHMDGFLLRLQNEQKESLIKE 187
           +LKKCLTFCINYKL+ SDLVSSWEVYYLNRQL+ SVV N  MDGFLL LQNEQKE++IKE
Sbjct: 24  VLKKCLTFCINYKLSPSDLVSSWEVYYLNRQLDESVVGNALMDGFLLHLQNEQKEAVIKE 83

Query: 186 EAHPHIYSSNDVDMILSEEHEENKEGTIGTPVDRKERLYTETIDSTPGTNVIVPSSGKSS 7
           E H HIYSSNDVDMILS+EHEE KE  +GTP DR  R + +  DS   TN    S GK S
Sbjct: 84  EPHLHIYSSNDVDMILSDEHEEIKEDILGTPSDRSGRHHADPFDSAQRTNGNSSSYGKPS 143


>ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus communis]
           gi|223546049|gb|EEF47552.1| alpha DNA polymerase,
           putative [Ricinus communis]
          Length = 621

 Score =  151 bits (381), Expect = 6e-35
 Identities = 78/121 (64%), Positives = 90/121 (74%)
 Frame = -2

Query: 366 ILKKCLTFCINYKLTASDLVSSWEVYYLNRQLNGSVVQNGHMDGFLLRLQNEQKESLIKE 187
           ILKKCLTFCINY L  +DLVSSWEVYYLNRQL+ S VQNG MDGFLL LQNEQKE++IKE
Sbjct: 23  ILKKCLTFCINYNLKPADLVSSWEVYYLNRQLDESTVQNGEMDGFLLHLQNEQKEAIIKE 82

Query: 186 EAHPHIYSSNDVDMILSEEHEENKEGTIGTPVDRKERLYTETIDSTPGTNVIVPSSGKSS 7
           E   HIYSS DVDMIL++E E+ KE   GTP D  ++L +E  DS   +     SSGK S
Sbjct: 83  EPDLHIYSSKDVDMILNDEGEDLKEEVPGTPTDESQKLNSEPFDSIIKSTGNGYSSGKRS 142

Query: 6   R 4
           +
Sbjct: 143 K 143


>ref|XP_004137446.1| PREDICTED: DNA polymerase alpha subunit B-like [Cucumis sativus]
           gi|449486914|ref|XP_004157440.1| PREDICTED: DNA
           polymerase alpha subunit B-like [Cucumis sativus]
          Length = 622

 Score =  139 bits (351), Expect = 2e-31
 Identities = 69/121 (57%), Positives = 90/121 (74%)
 Frame = -2

Query: 366 ILKKCLTFCINYKLTASDLVSSWEVYYLNRQLNGSVVQNGHMDGFLLRLQNEQKESLIKE 187
           ILKKC+TFC+NY L  SD+VSSWEVYYLNR L+GSVV+   +DGFL  LQNEQKE++IK 
Sbjct: 22  ILKKCVTFCVNYNLKPSDIVSSWEVYYLNRLLDGSVVELEQLDGFLQHLQNEQKETVIKG 81

Query: 186 EAHPHIYSSNDVDMILSEEHEENKEGTIGTPVDRKERLYTETIDSTPGTNVIVPSSGKSS 7
           E   H+YSS DVD+IL++E+E+  E  + TP  + + L+ E +D TP TN  + SSGK S
Sbjct: 82  EPDLHVYSSKDVDVILNDENEDLNEDILKTPNGKSQSLHKERLDLTPYTNEGLFSSGKPS 141

Query: 6   R 4
           +
Sbjct: 142 K 142


>ref|XP_003552790.1| PREDICTED: DNA polymerase alpha subunit B-like [Glycine max]
          Length = 606

 Score =  130 bits (326), Expect = 1e-28
 Identities = 69/123 (56%), Positives = 89/123 (72%), Gaps = 2/123 (1%)
 Frame = -2

Query: 366 ILKKCLTFCINYKLTASDLVSSWEVYYLNRQLNGSVVQNGHMDGFLLRLQNEQKESLI-- 193
           IL KC+T+CINY LT SDLVSSWEVYYLNRQLN  +VQN  +DGFLL LQNE+KE++I  
Sbjct: 22  ILSKCVTYCINYSLTPSDLVSSWEVYYLNRQLNEPIVQNTEIDGFLLHLQNEKKETVIKE 81

Query: 192 KEEAHPHIYSSNDVDMILSEEHEENKEGTIGTPVDRKERLYTETIDSTPGTNVIVPSSGK 13
           KEEA  HIYS  DV+MIL+ + ++ K+ T GTP++  +   +  +D+T      V SSGK
Sbjct: 82  KEEAGLHIYSIGDVEMILNND-DDTKDNTPGTPINHHQDPLSPALDTTSLMYENVLSSGK 140

Query: 12  SSR 4
            S+
Sbjct: 141 PSK 143


>ref|XP_003537544.1| PREDICTED: DNA polymerase alpha subunit B-like [Glycine max]
          Length = 605

 Score =  127 bits (320), Expect = 7e-28
 Identities = 70/123 (56%), Positives = 86/123 (69%), Gaps = 2/123 (1%)
 Frame = -2

Query: 366 ILKKCLTFCINYKLTASDLVSSWEVYYLNRQLNGSVVQNGHMDGFLLRLQNEQKESLI-- 193
           IL KC+TFCINY LT SDLVSSWEVYYLNRQLN  VVQN  +DGFLL LQNE+KE +I  
Sbjct: 22  ILSKCVTFCINYSLTPSDLVSSWEVYYLNRQLNEPVVQNAEIDGFLLHLQNEKKEDVIKE 81

Query: 192 KEEAHPHIYSSNDVDMILSEEHEENKEGTIGTPVDRKERLYTETIDSTPGTNVIVPSSGK 13
           KEEA  HIYS  DV+MIL+ + ++ K+ T GTP++  +   +   D+       V SSGK
Sbjct: 82  KEEAGLHIYSIGDVEMILNND-DDTKDNTPGTPINHHQDPLSPAPDTPSLMYENVLSSGK 140

Query: 12  SSR 4
            S+
Sbjct: 141 PSK 143