BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036251
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containi...    63   2e-08
emb|CBI24422.3| unnamed protein product [Vitis vinifera]               63   2e-08
ref|XP_002299777.1| predicted protein [Populus trichocarpa] gi|2...    63   3e-08
ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containi...    60   2e-07
ref|XP_002866951.1| pentatricopeptide repeat-containing protein ...    57   2e-06

>ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Vitis vinifera]
          Length = 518

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 31/61 (50%), Positives = 43/61 (70%)
 Frame = +3

Query: 3   ITKRRGVSAIEIDCSFHEFMAGDKSHMDSEYIYAILDQLSLESMLDGYVPETNLDDLSEC 182
           I K+ G S+IE+D S HEF+AGDK+H++++ IYA+LD L LE  + GYVPE  +    E 
Sbjct: 458 IHKKPGFSSIEMDGSIHEFVAGDKTHVETQNIYAMLDHLFLELRICGYVPEIEVGKSYEH 517

Query: 183 D 185
           D
Sbjct: 518 D 518


>emb|CBI24422.3| unnamed protein product [Vitis vinifera]
          Length = 502

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 31/61 (50%), Positives = 43/61 (70%)
 Frame = +3

Query: 3   ITKRRGVSAIEIDCSFHEFMAGDKSHMDSEYIYAILDQLSLESMLDGYVPETNLDDLSEC 182
           I K+ G S+IE+D S HEF+AGDK+H++++ IYA+LD L LE  + GYVPE  +    E 
Sbjct: 442 IHKKPGFSSIEMDGSIHEFVAGDKTHVETQNIYAMLDHLFLELRICGYVPEIEVGKSYEH 501

Query: 183 D 185
           D
Sbjct: 502 D 502


>ref|XP_002299777.1| predicted protein [Populus trichocarpa] gi|222847035|gb|EEE84582.1|
           predicted protein [Populus trichocarpa]
          Length = 439

 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 30/57 (52%), Positives = 39/57 (68%)
 Frame = +3

Query: 3   ITKRRGVSAIEIDCSFHEFMAGDKSHMDSEYIYAILDQLSLESMLDGYVPETNLDDL 173
           I K+ G S+IEI C  HEF+AGDKSH  +E IY++L+ LS +  L GYVPE    D+
Sbjct: 379 IQKKPGFSSIEIGCDIHEFVAGDKSHDKAEDIYSMLELLSFDQALCGYVPEAMAKDM 435


>ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
           chloroplastic-like [Glycine max]
          Length = 521

 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 27/51 (52%), Positives = 38/51 (74%)
 Frame = +3

Query: 3   ITKRRGVSAIEIDCSFHEFMAGDKSHMDSEYIYAILDQLSLESMLDGYVPE 155
           I K+ G S+IEID S H+F++GDKSH + ++IYA L+ LS E  L GY+P+
Sbjct: 461 IQKKPGFSSIEIDSSIHKFVSGDKSHEEKDHIYAALEFLSFELQLCGYIPD 511


>ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297312787|gb|EFH43210.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 630

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
 Frame = +3

Query: 3   ITKRRGVSAIEIDCSFHEFMAGDKSHMDSEYIYAILDQLSLESMLDGYVPETN--LDDLS 176
           I K  G+S IEID   HEF AGD+ H+ S+ IY +L ++S      GYVP TN  L DL 
Sbjct: 492 IVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLE 551

Query: 177 ECD 185
           E +
Sbjct: 552 ETE 554