BLASTX nr result

ID: Coptis24_contig00036224 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036224
         (390 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513279.1| Protein regulator of cytokinesis, putative [...    87   1e-15
ref|NP_001043901.1| Os01g0685900 [Oryza sativa Japonica Group] g...    66   3e-09
ref|NP_001130355.1| uncharacterized protein LOC100191450 [Zea ma...    60   1e-07
ref|XP_003622331.1| Protein regulator of cytokinesis [Medicago t...    59   4e-07
ref|XP_002456163.1| hypothetical protein SORBIDRAFT_03g031480 [S...    59   5e-07

>ref|XP_002513279.1| Protein regulator of cytokinesis, putative [Ricinus communis]
           gi|223547653|gb|EEF49147.1| Protein regulator of
           cytokinesis, putative [Ricinus communis]
          Length = 724

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 57/131 (43%), Positives = 68/131 (51%), Gaps = 31/131 (23%)
 Frame = -1

Query: 390 AGLPSKKHSFNSVNAREPESPVTRKPFSPVYSNNNS------------------------ 283
           AGLP+KKH F++VNA EPESP+ RKPFSP+ S  +S                        
Sbjct: 584 AGLPAKKHPFSTVNAHEPESPMLRKPFSPISSTGSSKANILEDVTTAHGETIKKIVTTTP 643

Query: 282 ----VVDEENRTPKVR-IXXXXXXXXXXXPMQMAATPAPPVAVLFPAT--KVEVTPDIEY 124
               + DEEN TPK   I           PMQ A TPA PV V +     K EV  ++EY
Sbjct: 644 SKTTMADEENWTPKTMPIPVPTTPSTLSVPMQTAITPAHPVPVPYGGATPKEEVPEEVEY 703

Query: 123 SFEERRAGFIL 91
           SFEERRAGF+L
Sbjct: 704 SFEERRAGFVL 714


>ref|NP_001043901.1| Os01g0685900 [Oryza sativa Japonica Group]
           gi|56784993|dbj|BAD82523.1| microtubule-associated
           protein-like [Oryza sativa Japonica Group]
           gi|113533432|dbj|BAF05815.1| Os01g0685900 [Oryza sativa
           Japonica Group] gi|215686717|dbj|BAG88970.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|218188865|gb|EEC71292.1| hypothetical protein
           OsI_03306 [Oryza sativa Indica Group]
           gi|222619065|gb|EEE55197.1| hypothetical protein
           OsJ_03043 [Oryza sativa Japonica Group]
          Length = 689

 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 47/119 (39%), Positives = 60/119 (50%), Gaps = 19/119 (15%)
 Frame = -1

Query: 390 AGLPSKKHSFNSVNAREPESPVTRKPFSPVYSNN-----------NSVVDEENRTPKV-R 247
           AGLP KK SFN+   RE E+P  RKPF+ +   N           N+  D+ENRTPK   
Sbjct: 568 AGLPIKKLSFNASTLRETETP--RKPFAQITPGNSVSSTPVRPITNNTEDDENRTPKTFT 625

Query: 246 IXXXXXXXXXXXPMQMAATP-------APPVAVLFPATKVEVTPDIEYSFEERRAGFIL 91
                       PMQMA TP       A PV++++   +V +  DI+YSFEERR    L
Sbjct: 626 ALNPKTPMTVTAPMQMAMTPSLANKVSATPVSLVYDKPEVTLQEDIDYSFEERRLAIYL 684


>ref|NP_001130355.1| uncharacterized protein LOC100191450 [Zea mays]
           gi|194688922|gb|ACF78545.1| unknown [Zea mays]
           gi|413950946|gb|AFW83595.1| hypothetical protein
           ZEAMMB73_552543 [Zea mays] gi|413950947|gb|AFW83596.1|
           hypothetical protein ZEAMMB73_552543 [Zea mays]
          Length = 689

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 48/120 (40%), Positives = 59/120 (49%), Gaps = 20/120 (16%)
 Frame = -1

Query: 390 AGLPSKKHSFNSVNAREPESPVTRKPFSPVYSNNN----------SVVDEENRTPKVRI- 244
           AGLP KK SFN+   RE E+P  RKPF+ +   NN          S  +EEN+TP+  + 
Sbjct: 567 AGLPIKKLSFNASTLREAETP--RKPFAQIMPGNNVSPMPTRPISSATEEENKTPRTFVG 624

Query: 243 -XXXXXXXXXXXPMQMAATPAPPVAVL-FPATKVE-------VTPDIEYSFEERRAGFIL 91
                       PMQMA TPA    V+  PAT  +       +  DIEYSFEERR    L
Sbjct: 625 GLNAKTPATVTAPMQMAMTPAVANKVIATPATLFQEKADSPALPADIEYSFEERRLAVYL 684


>ref|XP_003622331.1| Protein regulator of cytokinesis [Medicago truncatula]
            gi|355497346|gb|AES78549.1| Protein regulator of
            cytokinesis [Medicago truncatula]
          Length = 729

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 49/154 (31%), Positives = 63/154 (40%), Gaps = 54/154 (35%)
 Frame = -1

Query: 390  AGLPSKKHSFNSVNAREPESPVTRKPFSPVYSNNNS------------------------ 283
            AG+P+KKHS  + +A E  SP+TR+PFSP+ SNN S                        
Sbjct: 578  AGIPAKKHSLGAASAYELXSPLTRQPFSPLSSNNVSSKANVANAANEHIMQSEKFPKTMA 637

Query: 282  --------------VVDEENRTPK-VRIXXXXXXXXXXXPMQMAATPAPPVAVLFPATKV 148
                          V D+EN+TPK + I           PM MA TP P       +  V
Sbjct: 638  LNNVPFVSPCKAMTVTDQENKTPKAMPIPIPPTPSTVSIPMNMAVTPVPSSV----SMNV 693

Query: 147  EVTP---------------DIEYSFEERRAGFIL 91
             VTP               +IEYSFEERR  + +
Sbjct: 694  AVTPVPSSATVGCNVIPVQEIEYSFEERRLAYYM 727


>ref|XP_002456163.1| hypothetical protein SORBIDRAFT_03g031480 [Sorghum bicolor]
           gi|241928138|gb|EES01283.1| hypothetical protein
           SORBIDRAFT_03g031480 [Sorghum bicolor]
          Length = 687

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 47/113 (41%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
 Frame = -1

Query: 390 AGLPSKKHSFNSVNAREPESPVTRKPFSPVYSNNN----------SVVDEENRTPKVRI- 244
           AGLP KK  FN+   RE E+P  RKPF+ +   NN          +  +EEN+TPK    
Sbjct: 567 AGLPVKKLCFNASTLREAETP--RKPFAQIMPGNNVSSIPARPISNDTEEENKTPKTFAG 624

Query: 243 XXXXXXXXXXXPMQMAATPAPPVAV------LFPATKVEVTP-DIEYSFEERR 106
                      PMQMAATPA    V      LF   ++   P DIEYSFEERR
Sbjct: 625 LNPKTPATVTAPMQMAATPAVANKVVATPETLFQKAELPALPADIEYSFEERR 677


Top