BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036223
         (475 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containi...    81   1e-13
ref|XP_002520999.1| pentatricopeptide repeat-containing protein,...    71   8e-11
ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containi...    65   6e-09
ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containi...    65   6e-09
ref|XP_004151739.1| PREDICTED: pentatricopeptide repeat-containi...    57   1e-06

>ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
           gi|297735515|emb|CBI17955.3| unnamed protein product
           [Vitis vinifera]
          Length = 627

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 41/63 (65%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
 Frame = +2

Query: 14  NVVTFNTLMRGFL-NEEPQKVVQHLHKMRDKNLRPDASTAAIVIELLSKDEKSREYLNSF 190
           N+VTFNTLMRGF  N+E QKVV+ L +M +K+  PDAST +IV++LLSKDEK REYL+  
Sbjct: 552 NLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLL 611

Query: 191 PTF 199
           PTF
Sbjct: 612 PTF 614


>ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539836|gb|EEF41416.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 628

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 38/63 (60%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
 Frame = +2

Query: 14  NVVTFNTLMRGF-LNEEPQKVVQHLHKMRDKNLRPDASTAAIVIELLSKDEKSREYLNSF 190
           NVVTFNTLMRG  LN E  K+V+ LHKM  + L PDAST  IV+++L KDE   E LN  
Sbjct: 560 NVVTFNTLMRGLCLNSERPKIVELLHKMAARKLSPDASTLLIVMDILLKDENYHECLNLL 619

Query: 191 PTF 199
           PTF
Sbjct: 620 PTF 622


>ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 31/63 (49%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
 Frame = +2

Query: 14  NVVTFNTLMRGFLNEEP-QKVVQHLHKMRDKNLRPDASTAAIVIELLSKDEKSREYLNSF 190
           +++T+NTLMRGF      ++VVQ LH+M  K++ PDA T +IV+++LSKDEK +E L+  
Sbjct: 529 DIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLL 588

Query: 191 PTF 199
           P F
Sbjct: 589 PRF 591


>ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 31/63 (49%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
 Frame = +2

Query: 14  NVVTFNTLMRGFLNEEP-QKVVQHLHKMRDKNLRPDASTAAIVIELLSKDEKSREYLNSF 190
           +++T+NTLMRGF      ++VVQ LH+M  K++ PDA T +IV+++LSKDEK +E L+  
Sbjct: 504 DIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLL 563

Query: 191 PTF 199
           P F
Sbjct: 564 PRF 566


>ref|XP_004151739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 225

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 28/69 (40%), Positives = 48/69 (69%), Gaps = 1/69 (1%)
 Frame = +2

Query: 14  NVVTFNTLMRGFL-NEEPQKVVQHLHKMRDKNLRPDASTAAIVIELLSKDEKSREYLNSF 190
           +++T+NTL+ GF  + +  +VV+ LHKM  +++ PDA +  IVI++L KDEK +E L+  
Sbjct: 155 DIITYNTLLCGFCQSNKSDEVVKLLHKMIQRDMSPDAISCNIVIDMLRKDEKYQECLDLL 214

Query: 191 PTFLPEHKQ 217
           P FL + ++
Sbjct: 215 PRFLVQERR 223