BLASTX nr result

ID: Coptis24_contig00036208 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00036208
         (610 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|2...    84   2e-14
ref|XP_002467234.1| hypothetical protein SORBIDRAFT_01g021750 [S...    78   1e-12
ref|XP_002438569.1| hypothetical protein SORBIDRAFT_10g022040 [S...    74   2e-11
emb|CAN68153.1| hypothetical protein VITISV_009302 [Vitis vinifera]    74   2e-11
emb|CAN67224.1| hypothetical protein VITISV_029053 [Vitis vinifera]    74   3e-11

>ref|XP_002331338.1| predicted protein [Populus trichocarpa] gi|222873371|gb|EEF10502.1|
            predicted protein [Populus trichocarpa]
          Length = 819

 Score = 84.3 bits (207), Expect = 2e-14
 Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 3/205 (1%)
 Frame = -1

Query: 607  DHKSSGCFYTWTNN-GDGILRKWSKIDRCLINSLWTSMFPSSGVEFLPQGLSDHSPIVI- 434
            D + SG  YTW+N   + ++ +  K+DR L+N  W   FP S   FLP G+SDHSP+V+ 
Sbjct: 553  DLRYSGMHYTWSNQCPENLIMR--KLDRVLVNEKWNLKFPLSEARFLPSGMSDHSPMVVK 610

Query: 433  AISNSYTCRPPFKFCNYWLVNPSFKETLINCW-FISHDNPSFMXXXXXXXXXXXXKGWPR 257
             I N    + PF+F + W+ +  F   +   W   S   P +             K +  
Sbjct: 611  VIGNDQNKKKPFRFFDMWMDHDEFMPLVKKVWDQNSRGCPMYQLCCKLRKLKQELKLFNM 670

Query: 256  LSSSNLQKLVESTRANLEDIQMXXXXXXXXXXXXXLERIRRTELCDLMLMEEYDLMQRTN 77
               SN+   V   +  ++  Q               ER    +    +  EE    Q+  
Sbjct: 671  AHFSNISDRVRDAKNKMDKAQQALHTAHENPILCMRERDVVHKYASTVRAEESFFKQKAR 730

Query: 76   TDWLSFGDKCNAFFNNSVKEKKTRN 2
              WLS GD+  ++F+ SV  ++ RN
Sbjct: 731  IQWLSLGDQNTSYFHKSVNGRQNRN 755


>ref|XP_002467234.1| hypothetical protein SORBIDRAFT_01g021750 [Sorghum bicolor]
           gi|241921088|gb|EER94232.1| hypothetical protein
           SORBIDRAFT_01g021750 [Sorghum bicolor]
          Length = 426

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 6/204 (2%)
 Frame = -1

Query: 595 SGCFYTWTNNGDGILRKWSKIDRCLINSLWTSMFPSSGVEFLPQGLSDHSPIVIAI-SNS 419
           SG  YTWTN        + ++DRCL N+ W  M+P + V  LP   SDH+PI+  + SN+
Sbjct: 181 SGPAYTWTNKRFSTTPTFERLDRCLANAEWCMMYPRTTVYHLPMLRSDHTPILALLDSNT 240

Query: 418 YTCRPPFKFCNYWLVNPSFKETLINCWFIS-----HDNPSFMXXXXXXXXXXXXKGWPRL 254
           Y    PF+F N+WL+   ++ET    W  S     H    ++               P+L
Sbjct: 241 YNNTKPFRFENWWLMEQDYEETAKKSWQRSTNRLFHQKTKYLAVDLKKWCRKK----PKL 296

Query: 253 SSSNLQKLVESTRANLEDIQMXXXXXXXXXXXXXLERIRRTELCDLMLMEEYDLMQRTNT 74
           S+           +++ED+ +             L+         L+  +E+  +QR   
Sbjct: 297 SNQ---------LSSVEDLLLEEQSKPPSQQDFHLQMKLAEHHQQLLDKDEHYHLQRAKK 347

Query: 73  DWLSFGDKCNAFFNNSVKEKKTRN 2
           +W   GD+   FF+ ++ ++  +N
Sbjct: 348 NWAIHGDRNTHFFHQAIVKRTRKN 371


>ref|XP_002438569.1| hypothetical protein SORBIDRAFT_10g022040 [Sorghum bicolor]
           gi|241916792|gb|EER89936.1| hypothetical protein
           SORBIDRAFT_10g022040 [Sorghum bicolor]
          Length = 1088

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 58/206 (28%), Positives = 89/206 (43%), Gaps = 3/206 (1%)
 Frame = -1

Query: 610 YDHKSSGCFYTWTNNGDGILRKWSKIDRCLINSLWTSMFPSSGVEFLPQGLSDHSPIVIA 431
           +D    G  YTW+N        + ++DR   N+ W + FP++ V  LP   SDH+PI +A
Sbjct: 176 FDLGYHGPAYTWSNKRFSSFPTYERLDRFFGNAEWCANFPNTSVFHLPMLYSDHAPI-LA 234

Query: 430 ISNSYTCRP---PFKFCNYWLVNPSFKETLINCWFISHDNPSFMXXXXXXXXXXXXKGWP 260
           + NS  CR    PF+F N+WL+   F ET    W  SH   + +              W 
Sbjct: 235 VLNS-VCRKANHPFRFENWWLLTEDFGETARQSWKKSH---ARLFHLKTHYLGKDLCKWR 290

Query: 259 RLSSSNLQKLVESTRANLEDIQMXXXXXXXXXXXXXLERIRRTELCDLMLMEEYDLMQRT 80
           R   +N  +L +   ANL  +Q              L  +      D++  EE    QR 
Sbjct: 291 RSKQNNSSRL-KWVEANLLHVQSLPPTRNNISLQKHLISLHE----DILAKEEAYHRQRY 345

Query: 79  NTDWLSFGDKCNAFFNNSVKEKKTRN 2
             +W   GD+   FF+ ++ ++  RN
Sbjct: 346 KKNWAVAGDRNTKFFHQAILKRARRN 371


>emb|CAN68153.1| hypothetical protein VITISV_009302 [Vitis vinifera]
          Length = 1323

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 3/196 (1%)
 Frame = -1

Query: 583  YTWTNNGDGILRKWSKIDRCLINSLWTSMFPSSGVEFLPQGLSDHSPIVIAISNSYTCRP 404
            +TW+N  +  + K  ++DR L ++ W  +FP    E +P+  SDH PIV+  +N +   P
Sbjct: 473  FTWSNLQESSVCK--RLDRFLYSNEWGQLFPQGLQEAVPRRTSDHWPIVLD-TNPFKWGP 529

Query: 403  P-FKFCNYWLVNPSFKETLINCW--FISHDNPSFMXXXXXXXXXXXXKGWPRLSSSNLQK 233
              F+F N WL +PSFKE   N W  F  +                  K W ++S   L++
Sbjct: 530  TLFRFENMWLQHPSFKENFRNWWRGFQGNGWEGHKFMRRLQFVKANLKEWNKVSFGELKE 589

Query: 232  LVESTRANLEDIQMXXXXXXXXXXXXXLERIRRTELCDLMLMEEYDLMQRTNTDWLSFGD 53
              +S   +L +                   +R+ EL +L+L EE    Q+    W+  GD
Sbjct: 590  RKKSILNDLANFDAIEQVGGLTSNLLVQRALRKGELEELILREEIHWRQKARVKWVKEGD 649

Query: 52   KCNAFFNNSVKEKKTR 5
              + FF+    +++ R
Sbjct: 650  YNSKFFHKVANDRRNR 665


>emb|CAN67224.1| hypothetical protein VITISV_029053 [Vitis vinifera]
          Length = 1120

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 54/196 (27%), Positives = 88/196 (44%), Gaps = 3/196 (1%)
 Frame = -1

Query: 583 YTWTNNGDGILRKWSKIDRCLINSLWTSMFPSSGVEFLPQGLSDHSPIVIAISNSYTCRP 404
           +TW+N  +  + K  ++DR L ++ W  +FP S  E LP+  SDH PIV+  +N +   P
Sbjct: 256 FTWSNMQEHPVCK--RLDRFLYSNEWEQLFPQSLQEVLPRWTSDHWPIVLE-TNPFKWDP 312

Query: 403 -PFKFCNYWLVNPSFKETLINCW--FISHDNPSFMXXXXXXXXXXXXKGWPRLSSSNLQK 233
            PF+F N WL +PSFKE+  + W  F                     K W + S  ++ +
Sbjct: 313 TPFRFENMWLQHPSFKESFKSWWREFQGDGWEGHKFMRKLQFLRANLKEWNKTSFGDVIE 372

Query: 232 LVESTRANLEDIQMXXXXXXXXXXXXXLERIRRTELCDLMLMEEYDLMQRTNTDWLSFGD 53
             +S   +L +                   +R+ EL +++L EE    Q+    W+  GD
Sbjct: 373 RKKSILLDLANFDSMEQEGGLSPELLIQRALRKGELEEVILREEIHWRQKARVKWVKEGD 432

Query: 52  KCNAFFNNSVKEKKTR 5
             + FF+     K+ R
Sbjct: 433 CNSKFFHKVANGKRNR 448


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